PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c1_39960V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 89aa MW: 9346.99 Da PI: 10.3805 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 100.2 | 1.3e-31 | 23 | 87 | 5 | 69 |
S1FA 5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPG 69 ++++ G+nPGl+vl+vv g ll+f +gny ly yaqknlP ++kkPvskkklk+eklk Gv + G Pp3c1_39960V3.2.p 23 IEQSTGINPGLVVLIVVLGALLIFGLGNYFLYQYAQKNLPVKRKKPVSKKKLKKEKLKGGVRPAG 87 34569********************************************************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04689 | 1.9E-29 | 25 | 87 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MGAIASDDSA DVDPSAFMGQ GSIEQSTGIN PGLVVLIVVL GALLIFGLGN YFLYQYAQKN 60 LPVKRKKPVS KKKLKKEKLK GGVRPAGD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 63 | 74 | KRKKPVSKKKLK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024393659.1 | 2e-18 | DNA-binding protein S1FA-like | ||||
TrEMBL | A0A2K1LBK9 | 4e-55 | A0A2K1LBK9_PHYPA; Uncharacterized protein | ||||
STRING | PP1S163_90V6.1 | 7e-56 | (Physcomitrella patens) |
Link Out ? help Back to Top | |
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Phytozome | Pp3c1_39960V3.2.p |