PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_39780V3.1.p
Common Namem4, PHYPADRAFT_140124, PPM4
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family M-type_MADS
Protein Properties Length: 381aa    MW: 42280.2 Da    PI: 9.1302
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_39780V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF854.3e-27959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       k+ien +nrqvt+skRrng+ KKA+ELSvLCd++ a+i+fs++gkl  ys+
  Pp3c1_39780V3.1.p  9 KKIENPTNRQVTYSKRRNGLVKKAYELSVLCDIDLALIMFSPSGKLTQYSN 59
                       68***********************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.016161IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.11E-32293IPR002100Transcription factor, MADS-box
CDDcd002659.83E-36271No hitNo description
PRINTSPR004047.9E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.198115223IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MGRVKLEIKK IENPTNRQVT YSKRRNGLVK KAYELSVLCD IDLALIMFSP SGKLTQYSNC  60
SIEDIIGRFA NLPMHERNKR KLENLEYLHK ALKKLAGDKE LVSNQLISGS KSYEVGLLQE  120
ELKKSQQEKE LVQQRARLYL ADQQLLQSVT SVQQLANMET ELEQAIERVR ARKAYVSSAY  180
EAASVMQRQV MALQVRAQQQ QQQQGLSGST HPPFLQWNNP ERGEAILQDF MEQQTNSQSI  240
VPVQMNREIG SSNEAGPSTF FPQTGSQSNL HSLAGQMSLV GVNRGLSIHD MALERSRGQY  300
EDRKKSKGES NTGFGASSSS SGAAADQGTG ETFTGQSEPA HGSAPSASNW QLSHQAHHAQ  360
AYSAAHYPTG YFNQNTDTWK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A8e-17190190MEF2 CHIMERA
6byy_B8e-17190190MEF2 CHIMERA
6byy_C8e-17190190MEF2 CHIMERA
6byy_D8e-17190190MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4193300.0AJ419330.1 Physcomitrella patens mRNA for putative MADS-domain transcription factor (m4 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024371368.10.0MADS-box transcription factor 3-like
TrEMBLQ8L6F40.0Q8L6F4_PHYPA; MIKC MADS-domain protein PPM4
STRINGPP1S163_73V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.16e-34AGAMOUS-like 104
Publications ? help Back to Top
  1. Henschel K, et al.
    Two ancient classes of MIKC-type MADS-box genes are present in the moss Physcomitrella patens.
    Mol. Biol. Evol., 2002. 19(6): p. 801-14
    [PMID:12032236]
  2. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]