PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_39760V3.3.p
Common NamePHYPADRAFT_191533, PPMA11
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family M-type_MADS
Protein Properties Length: 409aa    MW: 45942.5 Da    PI: 8.5911
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_39760V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.34.2e-28959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       k+ien +nrqvt+skRrng++KKA+ELSvLCd++va+i+fs++gkl  ys+
  Pp3c1_39760V3.3.p  9 KKIENPTNRQVTYSKRRNGLIKKAYELSVLCDVDVALIMFSPSGKLTQYSN 59
                       68***********************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.716161IPR002100Transcription factor, MADS-box
SMARTSM004328.2E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.16E-31287IPR002100Transcription factor, MADS-box
CDDcd002651.05E-38273No hitNo description
PRINTSPR004041.7E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.0E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.72138227IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MGRVKLEIKK IENPTNRQVT YSKRRNGLIK KAYELSVLCD VDVALIMFSP SGKLTQYSNC  60
SIEDVIGRFA NLPMHERNKS LEDMLTRFAN FHMVHDRSKY TRKPENLEYL HRALKNSNGE  120
KDLAANHQLL TGSKSYEIGL LQEELKKSQQ EKVLVQQRAR LYLADENLLQ NITSVQQLAN  180
METELEQALE RVRARKSYVS NAYQAASAMQ RQQHEFLGNS YQQMMALRQQ QQADIAGAPS  240
LFLQWNMPER GEPTLQDLME QQSNPSRAIA PTQTTRELVV SNGKASPTGN HFFPGVASQP  300
NLHMGEMSQL MASNRGLTMH NLELEQPAAQ YDDSGKKTKL DTNMGLASSS SSDVAAEATA  360
ETFTNQSVQA HGNTGGSNWH QAHHHAQAYT SPQYSNGFFN QMRGNNLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A4e-17269168Myocyte-specific enhancer factor 2A
3mu6_B4e-17269168Myocyte-specific enhancer factor 2A
3mu6_C4e-17269168Myocyte-specific enhancer factor 2A
3mu6_D4e-17269168Myocyte-specific enhancer factor 2A
6byy_A6e-17185185MEF2 CHIMERA
6byy_B6e-17185185MEF2 CHIMERA
6byy_C6e-17185185MEF2 CHIMERA
6byy_D6e-17185185MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.132480.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3344701e-112GQ334470.1 Funaria hygrometrica MIKC* MADS-box transcription factor (MADS11) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402585.10.0MADS-box transcription factor 3-like isoform X1
TrEMBLA9T4G00.0A9T4G0_PHYPA; MIKC MADS-domain protein PPMA11
STRINGPP1S90_121V6.20.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.17e-40AGAMOUS-like 66
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]