PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_38820V3.6.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 730aa    MW: 79641.7 Da    PI: 7.2468
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_38820V3.6.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.32.1e-16516562455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn+ ErrRRdriN+++  L+el+P++      K +Ka++Le+A+eY+k+Lq
  Pp3c1_38820V3.6.p 516 VHNQSERRRRDRINEKMRALQELIPNS-----NKTDKASMLEEAIEYLKMLQ 562
                        6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-19510572IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.324512561IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-17515566No hitNo description
Gene3DG3DSA:4.10.280.101.1E-17516570IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-14516562IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-17518567IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MNTMNHCVPE WDRSDDMLDA LIPSDDFHGP VYGKAEFVRS RKSHFCQVPV QNTLEAGGND  60
NGSVKMQGQS SKCNKPQWQA NYPTTWSSGQ GTEDGVTPGK PVTSKSDALL EAAVNEAPTE  120
VHPGHHIDVA HDEMVSWLQY PLDDTLERNY CSDFFGELPD SHTQLLRESF GHGSTKTART  180
SYLGSPGNDS VMNRASTTDT AMLLGAGRAA GFLPQAGAEA FSKVRTIHSL QPSSVTKWQQ  240
PHPNSSNGSN MCATANLATT RAPPSAPPSN PMLPPRTQPM IPNVNTQTPQ PNNKPGSMNF  300
SHFSRPAALM KANLHSLTGM NSVPPPSARF KQQQNQTGKP TVEACTSTGS SIAESTTAGQ  360
RSSGTQQELK TQPGVTEREQ SNGIKDCRWQ SAPSLSPKKD RDYVVSEGDC KKTFNDQETY  420
RISGVTSDAV LASSEKGVSH VTQHPDIQEP TITSSSGGCG TSAERPKGFA TSNKRKSSER  480
EDTECQSEDG EDESIDTKKP VTGRGSTAKR SRAAEVHNQS ERRRRDRINE KMRALQELIP  540
NSNKTDKASM LEEAIEYLKM LQLQLQMISM RTGMTLPPMV VPGGLQQHMQ MPQMPGMPSM  600
GMGMGMVPMG LSHGMMMDMG VTAQGRGVVP MQSHAGPSLN GSMASASSMV DVHDPRYLAS  660
GVIDPYNAYL ARQHQPMQMT QPLNIDKYNA YLMQQHQLQQ QQQHHHHQQQ HPQHQQHQQT  720
SNMNGGPSH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1520525ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.47710.0protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024383540.10.0uncharacterized protein LOC112286119
TrEMBLA0A2K1LBG90.0A0A2K1LBG9_PHYPA; Uncharacterized protein
STRINGPP1S147_126V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-37phytochrome interacting factor 3