PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_36120V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 634aa    MW: 68797.7 Da    PI: 4.7587
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_36120V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-18114163255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr++  +grWvAeIr+p     r  +r +lg+f ta eAa+a+++a++ ++g
  Pp3c1_36120V3.1.p 114 QYRGVRQRQ-WGRWVAEIREP-----RlrTRMWLGTFSTALEAARAYDEAALVYHG 163
                        6*****999.**********9.....445************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-35114177IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-29114172IPR001471AP2/ERF domain
PROSITE profilePS5103222.339114171IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-20114173IPR016177DNA-binding domain
CDDcd000183.73E-29114172No hitNo description
PRINTSPR003672.2E-9115126IPR001471AP2/ERF domain
PfamPF008476.0E-12115163IPR001471AP2/ERF domain
PRINTSPR003672.2E-9137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MTEIAMDTVR QQQQQPPSET SSCQPVVDRQ EKAGEQAALL VTEQLEAEHD HVDASSETNS  60
SASDVDSKSG AVTVDAKARG RKKRGAAGSS SSGTGGGQER VRKRRGGPEN GLHQYRGVRQ  120
RQWGRWVAEI REPRLRTRMW LGTFSTALEA ARAYDEAALV YHGPGARLNL PHETYQKPEN  180
IAPLGTHGVE YHFAHMNSNK IMGPGAATVA LMGNDGGKTD NYGMRVVDTP LSRRSSSCSV  240
ESIGLPAGCN FNHDPQWWTS SGSTSLNSTL RAIPSFANAP PTASSCNDGS ERFYLSQGPI  300
NLQTRPNSCE LPPDRQQRRQ NFAVPLEMCA GLFQSKYTGS LGLRSPNIHC ELGADCPYAD  360
RPGRGLHENG IHNPSTVTYA KSSTDQTDTP FQTDQYQPTN EPARDTSREM GPAFTATPQC  420
PDQPVTALVP PKETNTFTAP PVSDDTCQDC SSLEVAKKFE YSISEGSAEN SFATEFGSFD  480
FEPETFQSIT SSVESEHDKM LSSITAASSF TDQGPPVSSE TSPAILRGMD VIDEGSPSSF  540
WRDSSTSSHR SLDAPDAYAW NNIQEQRFLL KPCPDFDDMN GCWDDVASPI LAPPPPLLDL  600
PDLPNLSFDT LTDVFCSTPK VADVDKATNI RDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-16104173674Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372327.10.0uncharacterized protein LOC112280747
TrEMBLA0A2K1LB510.0A0A2K1LB51_PHYPA; Uncharacterized protein
STRINGPP1S28_144V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.19e-20ERF family protein