PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_33270V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 417aa    MW: 45232.8 Da    PI: 7.3577
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_33270V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.24.1e-10210257455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    sk   Ka +Le+ ++Y++sLq
  Pp3c1_33270V3.1.p 210 SHSLAERVRREKISERMKFLQDLVPGC----SKITGKAVMLEEIINYVQSLQ 257
                        8**************************....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.40E-11204261No hitNo description
SuperFamilySSF474591.83E-16204274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.688206256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-16206271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-7210257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-9212262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MAMNLYSIGL TMDPLKGGLA IHEVDSSTTQ DPSLSQLSFQ PGLAERMTNS GGGWSVNTRS  60
SNLINGAEAF EGTARGATKT GNECRHGGHV QQENSSSSQQ AAALLNRPGY ASGKRKGSIS  120
KNSITTKMLE SDEKKAKCLK KGVAGASASS SKGPVDEVKT SMKEEGSPGS EHSGEMSPRS  180
TLKTSSKSQD EHPKQDYIHV RARRGQATDS HSLAERVRRE KISERMKFLQ DLVPGCSKIT  240
GKAVMLEEII NYVQSLQRQI EFLSMKLAAV DPRLDINLEH LLNKELPQAR SPETTLMSPD  300
LVAGYGEYQT QLQIQQQINS CNMDLRSVGT LCDAYLRRSM NIAPMPHTSL AYTESLVDSL  360
TQTLNGVCDT GDLQAIVHMN NSQGRQEVFD QELHGFVPGF AGPGYLTPGH LKVEYS*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024368659.10.0transcription factor bHLH49-like
RefseqXP_024368668.10.0transcription factor bHLH49-like
RefseqXP_024368677.10.0transcription factor bHLH49-like
SwissprotQ9CAA96e-51BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A2K1LAQ70.0A0A2K1LAQ7_PHYPA; Uncharacterized protein
STRINGPP1S28_419V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.14e-52cryptochrome-interacting basic-helix-loop-helix 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]