PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c1_33080V3.4.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

bZIP

Protein Properties

Length: 393aa MW: 42959.1 Da PI: 6.6647

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c1_33080V3.4.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.6	2.7e-13	271	315	5	49
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 kr +r+ +NR +A+rsRqR+++++++Le ++L eN++L+k+l Pp3c1_33080V3.4.p 271 KRKKRMLSNRASAQRSRQRRQERLDQLEVLTAQLRVENSTLQKKL 315 9*****************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.1E-13	267	331	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.841	269	315	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.3E-10	271	315	No hit	No description
Pfam	PF00170	1.6E-11	271	315	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.8E-9	271	318	No hit	No description
PROSITE pattern	PS00036	0	274	289	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MGHFNPGEPS GMYRLDPTLI PQHSPLAQPR MLSVLPEAAN RLDLTSAIAH ELQRINSQPG 60 WLPWNQQLGE IQCSHEPANG LQLPPDSLLS HQNAGSAGRP IPQYIPRFDE ALGPPAQQLP 120 TRLDLYSPDL EPLASAHQGF YSRADNGVPR DVGAHQRTRL HPGHQALDAG GRVESMARSV 180 SPWIERMMQA DVTPTPSPSL GISTSLSLSQ RGLGEASCVA SQTAELQSCH SSDVQRSAFQ 240 CGVQRDQSTA EASAELCTDD EDWEARPLDE KRKKRMLSNR ASAQRSRQRR QERLDQLEVL 300 TAQLRVENST LQKKLGVAVQ VAKKFEDENK ALQRRVERLS KELESGKARM PTERAFDECA 360 SSQQTTCTSS CEMVGSECWC VIGRGSGGAG CG*

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MGHFNPGEPS GMYRLDPTLI PQHSPLAQPR MLSVLPEAAN RLDLTSAIAH ELQRINSQPG  60
WLPWNQQLGE IQCSHEPANG LQLPPDSLLS HQNAGSAGRP IPQYIPRFDE ALGPPAQQLP  120
TRLDLYSPDL EPLASAHQGF YSRADNGVPR DVGAHQRTRL HPGHQALDAG GRVESMARSV  180
SPWIERMMQA DVTPTPSPSL GISTSLSLSQ RGLGEASCVA SQTAELQSCH SSDVQRSAFQ  240
CGVQRDQSTA EASAELCTDD EDWEARPLDE KRKKRMLSNR ASAQRSRQRR QERLDQLEVL  300
TAQLRVENST LQKKLGVAVQ VAKKFEDENK ALQRRVERLS KELESGKARM PTERAFDECA  360
SSQQTTCTSS CEMVGSECWC VIGRGSGGAG CG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.14701	0.0	gametophore\| sporophyte

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024377704.1	0.0	uncharacterized protein LOC112283346 isoform X1
TrEMBL	A0A2K1LAQ6	0.0	A0A2K1LAQ6_PHYPA; Uncharacterized protein
STRING	PP1S355_22V6.1	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c1_33080V3.4.p