PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_32480V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HSF
Protein Properties Length: 530aa    MW: 58119.4 Da    PI: 4.5321
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_32480V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.17.6e-35591502102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y++++d++++ ++sws+ +nsf+v+++ +fa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++l
  Pp3c1_32480V3.3.p  59 FLTKTYDMVDDPATDPVVSWSAGNNSFIVWNPPDFAQELLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGRRDL 141
                        9****************************************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i+r+k 
  Pp3c1_32480V3.3.p 142 LRSIHRRKP 150
                        ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.9E-3853142IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.2E-6155148IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.13E-3455148IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.3E-205982IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-3059148IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-2097109IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434098122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-20110122IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MVSQVLKTDP HWPPLEESMG QERYALNTDV IPSSAVPGSL NSSVPQPMDV LQSTAPPPFL  60
TKTYDMVDDP ATDPVVSWSA GNNSFIVWNP PDFAQELLPK YFKHNNFSSF VRQLNTYGFR  120
KVDPDRWEFA NEGFLRGRRD LLRSIHRRKP ATHSQQSVQQ QQQQQHQQSE QGPVGPCVEV  180
GKFGLEGEIE RLKRDKNVLM MELVRLRQQQ QNTERDLQAM GQRLLTTENR QQHMMSFLAK  240
AMQNPSFLAQ LMQQSENKRL AATVRKKRRL PKQDSSGDDS ANSDSPADNQ IVAFHSNGNA  300
DSNGARAMIM QFFNSTDAAS SPSLDSGPLE ALFRDLGSAP SGTDVGTLAS RQSGVTLTEM  360
NIPGLGDSLP GPVVMDASTE ISDMHIPSPL SNRIPRLEGA LSMDNGSNHS SGEIKPDGLS  420
GESMEFNADG GRAPSEGEEV ISNLGSPAVS AANDIFWEQF LSEAPSGADH ELDHDLDLDP  480
RDKETDGDEI VEDSVEVLAG EDVGEVKNWW SKKPSVEQLS VQMGQLAPG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-255714818120Heat shock factor protein 1
5d5u_B2e-255714827129Heat shock factor protein 1
5d5v_B2e-255714827129Heat shock factor protein 1
5d5v_D2e-255714827129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.113320.0gametophore| protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024382543.10.0heat stress transcription factor A-1b-like
TrEMBLA0A2K1LAL80.0A0A2K1LAL8_PHYPA; Uncharacterized protein
STRINGPP1S249_84V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-104heat shock factor 3