PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_32480V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HSF
Protein Properties Length: 483aa    MW: 53046.7 Da    PI: 4.5616
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_32480V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.36.6e-35121032102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y++++d++++ ++sws+ +nsf+v+++ +fa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++l
  Pp3c1_32480V3.2.p  12 FLTKTYDMVDDPATDPVVSWSAGNNSFIVWNPPDFAQELLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGRRDL 94 
                        9****************************************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i+r+k 
  Pp3c1_32480V3.2.p  95 LRSIHRRKP 103
                        ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467859.79E-358101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.2E-618101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.6E-389101IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.5E-201235IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3012101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-205062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MDVLQSTAPP PFLTKTYDMV DDPATDPVVS WSAGNNSFIV WNPPDFAQEL LPKYFKHNNF  60
SSFVRQLNTY GFRKVDPDRW EFANEGFLRG RRDLLRSIHR RKPATHSQQS VQQQQQQQHQ  120
QSEQGPVGPC VEVGKFGLEG EIERLKRDKN VLMMELVRLR QQQQNTERDL QAMGQRLLTT  180
ENRQQHMMSF LAKAMQNPSF LAQLMQQSEN KRLAATVRKK RRLPKQDSSG DDSANSDSPA  240
DNQIVAFHSN GNADSNGARA MIMQFFNSTD AASSPSLDSG PLEALFRDLG SAPSGTDVGT  300
LASRQSGVTL TEMNIPGLGD SLPGPVVMDA STEISDMHIP SPLSNRIPRL EGALSMDNGS  360
NHSSGEIKPD GLSGESMEFN ADGGRAPSEG EEVISNLGSP AVSAANDIFW EQFLSEAPSG  420
ADHELDHDLD LDPRDKETDG DEIVEDSVEV LAGEDVGEVK NWWSKKPSVE QLSVQMGQLA  480
PG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-251010118120Heat shock factor protein 1
5d5u_B2e-251010127129Heat shock factor protein 1
5d5v_B2e-251010127129Heat shock factor protein 1
5d5v_D2e-251010127129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.113320.0gametophore| protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024382543.10.0heat stress transcription factor A-1b-like
TrEMBLA0A2K1LAL80.0A0A2K1LAL8_PHYPA; Uncharacterized protein
STRINGPP1S249_84V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-104heat shock factor 3