PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c1_32440V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 240aa MW: 26278.8 Da PI: 7.5701 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00014 | 26 | 48 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ Cg +F++ +L H+++H Pp3c1_32440V3.2.p 26 YMCKVCGNVFTSGQSLGGHMNVH 48 89*******************99 PP | |||||||
2 | AP2 | 48.3 | 2.6e-15 | 75 | 122 | 3 | 53 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 ykGVr++k +++WvAeIr p+ +++++lg++ t+ eAa a++ a k++ Pp3c1_32440V3.2.p 75 YKGVRYRKGQHKWVAEIRPPKG---SRTWWLGTYSTPREAAYAYDVAIKYF 122 9******************843...5********************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.1E-6 | 24 | 52 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.5E-5 | 25 | 49 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.177 | 26 | 53 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.2E-9 | 26 | 50 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 28 | 48 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.730.10 | 1.8E-18 | 74 | 131 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.1E-17 | 74 | 137 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.764 | 74 | 134 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-10 | 74 | 121 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.69E-17 | 75 | 131 | No hit | No description |
SuperFamily | SSF54171 | 1.31E-14 | 75 | 131 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MASSGSDSDG SSDGSPARTS SFSRTYMCKV CGNVFTSGQS LGGHMNVHRK DQRSPRASTA 60 SGAGFTLGGE NTESYKGVRY RKGQHKWVAE IRPPKGSRTW WLGTYSTPRE AAYAYDVAIK 120 YFGSKTSLNF EGHPIYEQIP KIPDDLPDQD FAAKLRKVVK KYGKLAMQSG PGPSTQEPAQ 180 EVDIDDFPDP GPPLSPFYTP FDCEEDVNNY SASAQYGSGH GYSSHQSCNW PYNSDHNFR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024368470.1 | 1e-180 | ethylene-responsive transcription factor ERF109-like isoform X1 | ||||
Refseq | XP_024368479.1 | 1e-180 | ethylene-responsive transcription factor ERF109-like isoform X2 | ||||
TrEMBL | A0A2K1LAK8 | 1e-163 | A0A2K1LAK8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S249_80V6.2 | 1e-164 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36450.1 | 9e-15 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c1_32440V3.2.p |