PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_28430V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 435aa    MW: 48503.7 Da    PI: 8.9756
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_28430V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.27.3e-12338378348
                AP2   3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaia 48 
                        ykGVr+  ++g+Wv+eIr     g  + +++lg+++t++eAa a +a
  Pp3c1_28430V3.2.p 338 YKGVRR--RNGKWVSEIRI----GqTNEKVWLGSYDTEKEAALAFDA 378
                        9***85..47*********....5446**********9999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.658337394IPR001471AP2/ERF domain
SMARTSM003801.9E-8337400IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-11337395IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-17337396IPR001471AP2/ERF domain
CDDcd000185.84E-15338396No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MTETKPCRWG LLIRQASVLG RFKNKLKLKK LEWKRFYEHF WGPAQPIPAS EAEYNDWIDS  60
YHAAEGSSAP SRNLQVEFRG WADSHHSAEG SHVSDFDSKY LDPLSPEDYG SLVQPEPIGR  120
LPLYQPGHQS PVPGMRPTVS PVFQHDLGMQ SQGGEFQPML AGNDFVDSTL VGSAVVDVSN  180
ASELNQIPST PGMAHLNSFD SSSLSANGHF DADNDNIVEW QSPSSAQVGN QSLSPFCMDA  240
RSNMDMIDSG SSSTIPLKFE DRLQWFKQFF EIGAEDAVLA PHQANAGRGW GVMVRIIGAC  300
IRLTRLVRRK KLEKRPLQGQ SIIRKKIRGF GENRSQLYKG VRRRNGKWVS EIRIGQTNEK  360
VWLGSYDTEK EAALAFDAGK YHCSAKRCRS FNFPDSPKYL GPLVNVRSLS KSDRRKAIQK  420
LAEDHVKTCS SALC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.24170.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385857.10.0uncharacterized protein LOC112287253
RefseqXP_024385866.10.0uncharacterized protein LOC112287253
RefseqXP_024385875.10.0uncharacterized protein LOC112287253
TrEMBLA0A2K1LA190.0A0A2K1LA19_PHYPA; Uncharacterized protein
STRINGPP1S21_320V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.14e-18ERF family protein