PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c1_28430V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 435aa MW: 48503.7 Da PI: 8.9756 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.2 | 7.3e-12 | 338 | 378 | 3 | 48 |
AP2 3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaia 48 ykGVr+ ++g+Wv+eIr g + +++lg+++t++eAa a +a Pp3c1_28430V3.1.p 338 YKGVRR--RNGKWVSEIRI----GqTNEKVWLGSYDTEKEAALAFDA 378 9***85..47*********....5446**********9999998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 14.658 | 337 | 394 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-8 | 337 | 400 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.32E-11 | 337 | 395 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-17 | 337 | 396 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.84E-15 | 338 | 396 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MTETKPCRWG LLIRQASVLG RFKNKLKLKK LEWKRFYEHF WGPAQPIPAS EAEYNDWIDS 60 YHAAEGSSAP SRNLQVEFRG WADSHHSAEG SHVSDFDSKY LDPLSPEDYG SLVQPEPIGR 120 LPLYQPGHQS PVPGMRPTVS PVFQHDLGMQ SQGGEFQPML AGNDFVDSTL VGSAVVDVSN 180 ASELNQIPST PGMAHLNSFD SSSLSANGHF DADNDNIVEW QSPSSAQVGN QSLSPFCMDA 240 RSNMDMIDSG SSSTIPLKFE DRLQWFKQFF EIGAEDAVLA PHQANAGRGW GVMVRIIGAC 300 IRLTRLVRRK KLEKRPLQGQ SIIRKKIRGF GENRSQLYKG VRRRNGKWVS EIRIGQTNEK 360 VWLGSYDTEK EAALAFDAGK YHCSAKRCRS FNFPDSPKYL GPLVNVRSLS KSDRRKAIQK 420 LAEDHVKTCS SALC* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.2417 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024385857.1 | 0.0 | uncharacterized protein LOC112287253 | ||||
Refseq | XP_024385866.1 | 0.0 | uncharacterized protein LOC112287253 | ||||
Refseq | XP_024385875.1 | 0.0 | uncharacterized protein LOC112287253 | ||||
TrEMBL | A0A2K1LA19 | 0.0 | A0A2K1LA19_PHYPA; Uncharacterized protein | ||||
STRING | PP1S21_320V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 4e-18 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c1_28430V3.1.p |