PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c1_28060V3.2.p

Common Name

PHYPADRAFT_160356

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Trihelix

Protein Properties

Length: 294aa MW: 33563.4 Da PI: 6.5441

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c1_28060V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	40.7	6.1e-13	49	134	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ + v + +++++e+ ++ rg + ++We+ ++ +e+g+ ++ kqC++k+++l+kr+k ++ ++ + ++ ++++fd+++ Pp3c1_28060V3.2.p 49 EWSARAVALFLDLYEEKYFEMDRGGFRSKDWEQLVERFnMEGGCGKTMKQCRDKMDSLKKRHKLERGRKAST-GAETCSWVWFDKMD 134 5*****************************9665555*********************99999985.666679*****7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0022	46	109	IPR001005	SANT/Myb domain
Pfam	PF13837	6.5E-16	47	135	No hit	No description

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MDSDRSQTPL PVSLLLPPPP MSMLSTSSLQ HPELEKNLTV RNVEEKREEW SARAVALFLD 60 LYEEKYFEMD RGGFRSKDWE QLVERFNMEG GCGKTMKQCR DKMDSLKKRH KLERGRKAST 120 GAETCSWVWF DKMDGMFGDH SKHQGILLGP PEASDVKFSA DKFRIAGGEN VIMEEQSRRI 180 VGSWREAKKV LQELPLSAEE RGKARTLLLE KKEEERLEYF VGDFEEVSFC LKLLVERASI 240 QSSGDAGVIQ MDFAVASDIQ RRLEEVLTDV ISLKRRAISD LRYFMPAAKN SKS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024392159.1	0.0	uncharacterized protein LOC112290232
TrEMBL	A0A2K1LA04	0.0	A0A2K1LA04_PHYPA; Uncharacterized protein
STRING	PP1S21_282V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.2	4e-21	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pp3c1_28060V3.2.p
Entrez Gene	5919345

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]