PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_27710V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 562aa    MW: 60778.1 Da    PI: 4.3851
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_27710V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.45.5e-21247296255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W+AeIrdps+     r +lg+++tae+Aa+a+++a+++++g
  Pp3c1_27710V3.2.p 247 KYRGVRQRP-WGKWAAEIRDPSK---GVRLWLGTYDTAEQAARAYDKAAREIRG 296
                        8********.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.86E-34246303No hitNo description
SuperFamilySSF541711.63E-22247304IPR016177DNA-binding domain
PROSITE profilePS5103224.223247304IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-32247305IPR001471AP2/ERF domain
PfamPF008474.4E-14247296IPR001471AP2/ERF domain
SMARTSM003805.7E-39247310IPR001471AP2/ERF domain
PRINTSPR003675.5E-11248259IPR001471AP2/ERF domain
PRINTSPR003675.5E-11270286IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MVGLRKDRSR GDIDVGMAKL QGVMGESEGC GGKTLKREFV SSDEELEEEQ EEGCSQRSRK  60
SQMLPKRVRV ICTDPDATDS SSDEEGSFRQ SHVVMRSSQR VLVQEIDMFR AGPELMAMAK  120
SSSSSSSSDS EFDETEECEV PSYHQVFTAQ TMQCSLNSAC SVDGEAGSFY EKPLWKTMKK  180
AKVPGKTMRK TTGAPSAVIS KLMNNKSGVS MLHASRSAAT MSTAKPPVPT KPAKAAMALT  240
KDIKQQKYRG VRQRPWGKWA AEIRDPSKGV RLWLGTYDTA EQAARAYDKA AREIRGPQAH  300
TNFSQADQSD VSGSVPTVSE THVAMQRNAQ SAAKLKSSSK RGQVVAEAAS NCKPLRALQV  360
GRIANSKEES CLSFGDMPSE VLGACQSLEE DLLDDDTFFD NLSEDNEFCM SDSLGGSEES  420
LCTSQTTSMP SSSSKSEAQS QPSPRDVLEA ARNSFAAVSE NSLESDSELS ESITDNNGVC  480
EVQSGCELDE VFLSDDLFFD FPDCEDANAA SNASDILDFA VGFDFGDDIG DFEFGAAESD  540
SLDWFSNAAD MPIPCVNPQF S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20246303159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.139860.0protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388556.10.0ethylene-responsive transcription factor ABR1-like
TrEMBLA0A2K1L9Y10.0A0A2K1L9Y1_PHYPA; Uncharacterized protein
STRINGPP1S21_247V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.18e-27ERF family protein