PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_27630V3.2.p
Common NamePHYPADRAFT_160342
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 544aa    MW: 59140.9 Da    PI: 4.3503
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_27630V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51e-20222271255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W+AeIrdps+     r +lg+++tae+Aa+a+++a+++++g
  Pp3c1_27630V3.2.p 222 KYRGVRQRP-WGKWAAEIRDPSK---GVRLWLGTYDTAEQAAQAYDRAAREIRG 271
                        8********.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-31222279IPR001471AP2/ERF domain
PROSITE profilePS5103223.96222279IPR001471AP2/ERF domain
CDDcd000181.32E-33222278No hitNo description
PfamPF008476.2E-14222271IPR001471AP2/ERF domain
SMARTSM003803.2E-38222285IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-22222279IPR016177DNA-binding domain
PRINTSPR003671.1E-10223234IPR001471AP2/ERF domain
PRINTSPR003671.1E-10245261IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MPGSDIYASS SSPLKRKSLK MVPGQSLKRE YSSSSSDDEG FNRNIKTKQC PKRVRVICTD  60
PDATDSSSDE EDNFRSLRNS QRRLVQEIHM SNEFGAADEL SSDSELDEPE VPSYHSVFIA  120
KAMQCSVSYA SPVDSESMLA SSSFYDKPWQ SKKKAPKATE KVTKLATAVE RPVTAVNTPK  180
SSVAPSQATR SVSMSTSKPR VGSKPQAKAS SFSAITDGKP HKYRGVRQRP WGKWAAEIRD  240
PSKGVRLWLG TYDTAEQAAQ AYDRAAREIR GPQAHTNFSS DAEVEQYTST TSGSNVSQKK  300
SAKKEEPLKE SAVVREPATK RQASTKNSVS KPMCSVQVER IIAGDVEEQC VSRGEDEDME  360
MFGSCDTIEE DIMSEDILFD NLNEDCGYLM CSPSSLSLDE SEGSPCSSLT ACEPSSSDVD  420
ASVKSEADSF STPEYMTPKQ VAAVTESFFA SSSENSSDSE SDLSDSLNET NCHKEVESCC  480
DLGEVFLSDD FLFDFPAGDV TNTEGLDFAA GLEFLEGDIG DLAFGSDQNE SLEWLNAADI  540
LVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21223278359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.184860.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024391827.10.0uncharacterized protein LOC112288075
TrEMBLA9RQ180.0A9RQ18_PHYPA; Predicted protein
STRINGPP1S21_239V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.19e-23ERF family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]