PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_27440V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 220aa    MW: 24289.9 Da    PI: 7.0842
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_27440V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-18655255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                       +y+GVr+++ +g+Wv+eIr+p     +  +r++lg+f tae+Aa a+++a++ + g
  Pp3c1_27440V3.1.p  6 KYRGVRQRH-WGSWVSEIRHP-----QlkTRVWLGTFETAEDAAHAYDEAARLMCG 55
                       8*******9.**********9.....445**********************87765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.40E-33565No hitNo description
PROSITE profilePS5103220.982663IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-20664IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-34663IPR001471AP2/ERF domain
SMARTSM003802.6E-39669IPR001471AP2/ERF domain
PfamPF008477.9E-12655IPR001471AP2/ERF domain
PRINTSPR003671.1E-10718IPR001471AP2/ERF domain
PRINTSPR003671.1E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MGRPQKYRGV RQRHWGSWVS EIRHPQLKTR VWLGTFETAE DAAHAYDEAA RLMCGAKART  60
NFPYDPHASK GPKSQLLSAT LTAKLQRWYL QSLQPDAQQG KKSSSRMSQS SLPCLCQLKH  120
AEQSNLGSCQ NQISSSQPLE SNLVRIEHFD DNADSFQAQP QPASSSDSCI SEEDKFAAEM  180
IEELLSWQTS SQFYGSFNSP TMSDSGSSSP CSVLTASGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-17563160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024371967.11e-162ethylene-responsive transcription factor ERF003-like
TrEMBLA0A2K1L9X81e-161A0A2K1L9X8_PHYPA; Uncharacterized protein
STRINGPP1S21_214V6.11e-162(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.16e-39ERF family protein