PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c1_2540V3.11.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 658aa MW: 72210.9 Da PI: 5.5072 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 464.9 | 4.5e-142 | 288 | 657 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 ++lL++cAea+s++d+ la+ l+a+l++ +s +gdpmqRlaay++e+L ar+a s++++y++l++++ + + + l+a+++++ev+P++kf Pp3c1_2540V3.11.p 288 EQLLVACAEALSNNDMPLANVLIAQLNQVVSIYGDPMQRLAAYMVEGLVARVAASGKGIYRSLKCKDPP---TRDLLSAMQILYEVCPYFKF 376 689*****************************************************************9...899***************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183 ++++aN I ea+++e+rvHiiDf+i qG+QW +L+qaLa+Rp+gpp+lRiTg+++p +g s+ +e +g+rLak+Ae++gvpf+f++ va Pp3c1_2540V3.11.p 377 GYMAANGSIAEAFQNESRVHIIDFQIAQGTQWTTLIQALAARPGGPPHLRITGIDDPMPGpnSNAGVEMVGKRLAKLAEAVGVPFDFHP-VA 467 **********************************************************99999**************************.7* PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275 k+ ++e ++L+ +pgEalaVn++l+lh+++desv+++++rd++L++vk l+Pkvv++veqe+++n+++F+ rflea++yy+a+f+sl+ +l Pp3c1_2540V3.11.p 468 KKGPEVEAWMLERQPGEALAVNFALHLHHMPDESVCTSNPRDRILHMVKALNPKVVTLVEQESNTNTAPFFPRFLEAMNYYAAIFESLDITL 559 ******************************************************************************************** PP GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367 +res+er++vE+++l+r+ivn++aceg +r+erhe ++kWr+rl++aGF+p+pls+++++++k+ll+ +++ yr+++e g+l+lgWk+r+L Pp3c1_2540V3.11.p 560 ARESKERVNVEQQCLARDIVNIIACEGIDRVERHEMMGKWRARLTMAGFRPYPLSQTVNNTIKTLLESYSD-KYRLKDEGGALYLGWKNRSL 650 **********************************************************************5.5******************* PP GRAS 368 vsvSaWr 374 ++ SaW+ Pp3c1_2540V3.11.p 651 IVSSAWQ 657 ******6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 71.629 | 261 | 638 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-139 | 288 | 657 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0004871 | Molecular Function | signal transducer activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 658 aa Download sequence Send to blast |
MSVQYRPELG TMVLTPGYPP GKEREYLSDT ANSQQTPSYY GAQKSYADGQ RQSAYGMKNK 60 SHSSPVSPLS PQDSSQAASD NGQRMSAGWS SASYQSESSS HSDGSLEGPG KLEEADYYGR 120 QHRHGEQLTG SVAYHNTPSS VLRPMGYPAE TAQAYQMPNY QQAVRYIPEE QYAQSQSNYA 180 QRNPEMAHML QVLESALLDD DDGADLPGSL GNGHDPASEG NWADTIEEFM AADASPADSS 240 TVTSATTPPE YGKQCRNGST NNYTGAVTAR VEEPPPQKLV VGTRSRSEQL LVACAEALSN 300 NDMPLANVLI AQLNQVVSIY GDPMQRLAAY MVEGLVARVA ASGKGIYRSL KCKDPPTRDL 360 LSAMQILYEV CPYFKFGYMA ANGSIAEAFQ NESRVHIIDF QIAQGTQWTT LIQALAARPG 420 GPPHLRITGI DDPMPGPNSN AGVEMVGKRL AKLAEAVGVP FDFHPVAKKG PEVEAWMLER 480 QPGEALAVNF ALHLHHMPDE SVCTSNPRDR ILHMVKALNP KVVTLVEQES NTNTAPFFPR 540 FLEAMNYYAA IFESLDITLA RESKERVNVE QQCLARDIVN IIACEGIDRV ERHEMMGKWR 600 ARLTMAGFRP YPLSQTVNNT IKTLLESYSD KYRLKDEGGA LYLGWKNRSL IVSSAWQ* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-73 | 294 | 656 | 26 | 378 | Protein SCARECROW |
5b3h_A | 3e-73 | 294 | 656 | 25 | 377 | Protein SCARECROW |
5b3h_D | 3e-73 | 294 | 656 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ppa.1713 | 0.0 | gametophore| protonema |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024379851.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_024379861.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_024379870.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_024379876.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_024379885.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_024379891.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_024379899.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q8H125 | 1e-174 | SCL5_ARATH; Scarecrow-like protein 5 | ||||
Swissprot | Q9LDL7 | 1e-175 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A2K1L6M1 | 0.0 | A0A2K1L6M1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S346_13V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48150.2 | 1e-177 | GRAS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c1_2540V3.11.p |
Publications ? help Back to Top | |||
---|---|---|---|
|