PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c1_23930V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C2H2

Protein Properties

Length: 311aa MW: 33261.5 Da PI: 4.382

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c1_23930V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	285	308	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ykC+ C+++F++ ++ +Hi H Pp3c1_23930V3.1.p 285 YKCTGCDRTFTSELSMSQHIAAkH 308 9******************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.0034	285	308	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.242	285	310	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	287	308	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MEFWGVEVPP GKPTSCPPGD GMHLHVSQAA LGKSKAKSGK ENERVILKVL VDDSEIVLGT 60 LSEGKCDQMQ LDLVFDREFK VSHSSSSSSI YLCGYRTECP EEYDSEDEHE DEEEDDEEDA 120 NVPAAVPIEH KAGKVITEVA GKAATAAANA VQKAVKKQVV QDDVSDEEDD EEDSDDDMDE 180 EDDEDESDES EEEELKVEAP KAEKKRAAAE PATKVVEKKS KTDASPKPAS GSGGKKGVKG 240 GQAMPVANET PKTPTDKGVK PAKTPKGTPT APPTTPVSEK KSGQYKCTGC DRTFTSELSM 300 SQHIAAKHKA *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.14397	0.0	gametophore\| protonema

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024389210.1	0.0	histone deacetylase HDT2-like isoform X3
TrEMBL	A0A2K1L9F1	0.0	A0A2K1L9F1_PHYPA; Uncharacterized protein
STRING	PP1S59_160V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44750.2	5e-17	histone deacetylase 3

Link Out ? help Back to Top
Phytozome	Pp3c1_23930V3.1.p