PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c1_22185V3.7.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C3H | ||||||||
Protein Properties | Length: 272aa MW: 28657.8 Da PI: 9.4737 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.3 | 5.5e-08 | 37 | 63 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f C++ d+C+FaHg+ Pp3c1_22185V3.7.p 37 FKTRLCNRFDTPEGCRFSDKCHFAHGE 63 79***********************96 PP | |||||||
2 | zf-CCCH | 36.9 | 6e-12 | 237 | 261 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +f++ GtC +G+rC+FaHg Pp3c1_22185V3.7.p 237 FKTKLCENFSK-GTCTFGERCHFAHG 261 69*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.045 | 36 | 63 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.671 | 36 | 64 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-5 | 37 | 63 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.1E-13 | 37 | 68 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.24E-8 | 37 | 67 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 5.61E-14 | 141 | 220 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 4.4E-11 | 149 | 219 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 2.4E-15 | 149 | 218 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 14.739 | 150 | 214 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 4.0E-11 | 152 | 215 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 2.58E-14 | 152 | 214 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-15 | 234 | 268 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.28E-8 | 235 | 266 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.8E-7 | 236 | 262 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.718 | 236 | 263 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-9 | 237 | 261 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MGGLAPLANI SSMGGGGARK VVGGVGLDDQ GANLGGFKTR LCNRFDTPEG CRFSDKCHFA 60 HGEKELRKSS NNFNTPSVER DSYARQDYSR DQGPSSASYR GGSGSGMYGT NGGRFGSGGP 120 GGRDREASRF GSYREPTPPG MAAANSFGAS STAKISIEAS LAGAIIGKGG INAKQICRLT 180 GAKLSIKEHE TDAGLRNVEM EGSFEQIKQA SQMVRHVLIH RDSVPARPPA GAVSHNFKTK 240 LCENFSKGTC TFGERCHFAH GAEDLRDPYR S* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.12431 | 0.0 | protonema |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00113 | ampDAP | Transfer from AT3G12130 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024386818.1 | 0.0 | zinc finger CCCH domain-containing protein 14-like | ||||
Refseq | XP_024386826.1 | 0.0 | zinc finger CCCH domain-containing protein 14-like | ||||
Refseq | XP_024386832.1 | 0.0 | zinc finger CCCH domain-containing protein 14-like | ||||
Refseq | XP_024386840.1 | 0.0 | zinc finger CCCH domain-containing protein 14-like | ||||
TrEMBL | A0A2K1L959 | 0.0 | A0A2K1L959_PHYPA; Uncharacterized protein | ||||
STRING | PP1S59_351V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 2e-31 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c1_22185V3.7.p |