PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_22185V3.6.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 272aa    MW: 28657.8 Da    PI: 9.4737
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_22185V3.6.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.5e-083763127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                       +kt+lC++f     C++ d+C+FaHg+
  Pp3c1_22185V3.6.p 37 FKTRLCNRFDTPEGCRFSDKCHFAHGE 63
                       79***********************96 PP
2zf-CCCH36.96e-12237261126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +kt+lC +f++ GtC +G+rC+FaHg
  Pp3c1_22185V3.6.p 237 FKTKLCENFSK-GTCTFGERCHFAHG 261
                        69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0453663IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.6713664IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-53763IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-133768IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-83767IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.61E-14141220IPR004088K Homology domain, type 1
SMARTSM003224.4E-11149219IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.102.4E-15149218IPR004088K Homology domain, type 1
PROSITE profilePS5008414.739150214IPR004088K Homology domain, type 1
PfamPF000134.0E-11152215IPR004088K Homology domain, type 1
CDDcd001052.58E-14152214No hitNo description
Gene3DG3DSA:4.10.1000.101.2E-15234268IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-8235266IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-7236262IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.718236263IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-9237261IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGGLAPLANI SSMGGGGARK VVGGVGLDDQ GANLGGFKTR LCNRFDTPEG CRFSDKCHFA  60
HGEKELRKSS NNFNTPSVER DSYARQDYSR DQGPSSASYR GGSGSGMYGT NGGRFGSGGP  120
GGRDREASRF GSYREPTPPG MAAANSFGAS STAKISIEAS LAGAIIGKGG INAKQICRLT  180
GAKLSIKEHE TDAGLRNVEM EGSFEQIKQA SQMVRHVLIH RDSVPARPPA GAVSHNFKTK  240
LCENFSKGTC TFGERCHFAH GAEDLRDPYR S*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.124310.0protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024386818.10.0zinc finger CCCH domain-containing protein 14-like
RefseqXP_024386826.10.0zinc finger CCCH domain-containing protein 14-like
RefseqXP_024386832.10.0zinc finger CCCH domain-containing protein 14-like
RefseqXP_024386840.10.0zinc finger CCCH domain-containing protein 14-like
TrEMBLA0A2K1L9590.0A0A2K1L959_PHYPA; Uncharacterized protein
STRINGPP1S59_351V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-31C3H family protein