PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c1_22185V3.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C3H | ||||||||
Protein Properties | Length: 346aa MW: 36398.2 Da PI: 9.2634 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.9 | 7.5e-08 | 111 | 137 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f C++ d+C+FaHg+ Pp3c1_22185V3.5.p 111 FKTRLCNRFDTPEGCRFSDKCHFAHGE 137 79***********************96 PP | |||||||
2 | zf-CCCH | 36.5 | 8.2e-12 | 311 | 335 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +f++ GtC +G+rC+FaHg Pp3c1_22185V3.5.p 311 FKTKLCENFSK-GTCTFGERCHFAHG 335 69*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.296 | 41 | 69 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1 | 41 | 68 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-6 | 42 | 66 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-7 | 43 | 66 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.671 | 110 | 138 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.045 | 110 | 137 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.7E-5 | 111 | 137 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-12 | 111 | 142 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.16E-7 | 111 | 141 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 9.4E-14 | 215 | 293 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 3.7E-15 | 223 | 292 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 4.4E-11 | 223 | 293 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.739 | 224 | 288 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 6.0E-11 | 226 | 289 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 6.54E-14 | 226 | 288 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-15 | 308 | 342 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-8 | 309 | 340 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.718 | 310 | 337 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.8E-7 | 310 | 336 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.7E-9 | 311 | 335 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MDPYGPPRKR PRPESGPLNG SNGTNSGHGG GDDYNKDGSS GNRTKPCTKF FSTSGCPYGE 60 GCHFLHFVPG GVQSMGGLAP LANISSMGGG GARKVVGGVG LDDQGANLGG FKTRLCNRFD 120 TPEGCRFSDK CHFAHGEKEL RKSSNNFNTP SVERDSYARQ DYSRDQGPSS ASYRGGSGSG 180 MYGTNGGRFG SGGPGGRDRE ASRFGSYREP TPPGMAAANS FGASSTAKIS IEASLAGAII 240 GKGGINAKQI CRLTGAKLSI KEHETDAGLR NVEMEGSFEQ IKQASQMVRH VLIHRDSVPA 300 RPPAGAVSHN FKTKLCENFS KGTCTFGERC HFAHGAEDLR DPYRS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 8 | 12 | KRPRP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.12431 | 0.0 | protonema |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00113 | ampDAP | Transfer from AT3G12130 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024386818.1 | 0.0 | zinc finger CCCH domain-containing protein 14-like | ||||
Refseq | XP_024386826.1 | 0.0 | zinc finger CCCH domain-containing protein 14-like | ||||
Refseq | XP_024386832.1 | 0.0 | zinc finger CCCH domain-containing protein 14-like | ||||
Refseq | XP_024386840.1 | 0.0 | zinc finger CCCH domain-containing protein 14-like | ||||
TrEMBL | A0A2K1L959 | 0.0 | A0A2K1L959_PHYPA; Uncharacterized protein | ||||
STRING | PP1S59_351V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 3e-30 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c1_22185V3.5.p |