PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_22185V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 346aa    MW: 36398.2 Da    PI: 9.2634
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_22185V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.97.5e-08111137127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +kt+lC++f     C++ d+C+FaHg+
  Pp3c1_22185V3.3.p 111 FKTRLCNRFDTPEGCRFSDKCHFAHGE 137
                        79***********************96 PP
2zf-CCCH36.58.2e-12311335126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +kt+lC +f++ GtC +G+rC+FaHg
  Pp3c1_22185V3.3.p 311 FKTKLCENFSK-GTCTFGERCHFAHG 335
                        69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.2964169IPR000571Zinc finger, CCCH-type
SMARTSM003561.14168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-64266IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-74366IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.671110138IPR000571Zinc finger, CCCH-type
SMARTSM003560.045110137IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-5111137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-12111142IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-7111141IPR000571Zinc finger, CCCH-type
SuperFamilySSF547919.4E-14215293IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.103.7E-15223292IPR004088K Homology domain, type 1
SMARTSM003224.4E-11223293IPR004087K Homology domain
PROSITE profilePS5008414.739224288IPR004088K Homology domain, type 1
PfamPF000136.0E-11226289IPR004088K Homology domain, type 1
CDDcd001056.54E-14226288No hitNo description
Gene3DG3DSA:4.10.1000.101.6E-15308342IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-8309340IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.718310337IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-7310336IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-9311335IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDPYGPPRKR PRPESGPLNG SNGTNSGHGG GDDYNKDGSS GNRTKPCTKF FSTSGCPYGE  60
GCHFLHFVPG GVQSMGGLAP LANISSMGGG GARKVVGGVG LDDQGANLGG FKTRLCNRFD  120
TPEGCRFSDK CHFAHGEKEL RKSSNNFNTP SVERDSYARQ DYSRDQGPSS ASYRGGSGSG  180
MYGTNGGRFG SGGPGGRDRE ASRFGSYREP TPPGMAAANS FGASSTAKIS IEASLAGAII  240
GKGGINAKQI CRLTGAKLSI KEHETDAGLR NVEMEGSFEQ IKQASQMVRH VLIHRDSVPA  300
RPPAGAVSHN FKTKLCENFS KGTCTFGERC HFAHGAEDLR DPYRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1812KRPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.124310.0protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024386818.10.0zinc finger CCCH domain-containing protein 14-like
RefseqXP_024386826.10.0zinc finger CCCH domain-containing protein 14-like
RefseqXP_024386832.10.0zinc finger CCCH domain-containing protein 14-like
RefseqXP_024386840.10.0zinc finger CCCH domain-containing protein 14-like
TrEMBLA0A2K1L9590.0A0A2K1L959_PHYPA; Uncharacterized protein
STRINGPP1S59_351V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-30C3H family protein