PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_22180V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 370aa    MW: 39026.3 Da    PI: 8.8659
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_22180V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.78.2e-08135161127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +kt+lC++f     C++ d+C+FaHg+
  Pp3c1_22180V3.1.p 135 FKTRLCNRFDTPEGCRFSDKCHFAHGE 161
                        79***********************96 PP
2zf-CCCH36.48.9e-12335359126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +kt+lC +f++ GtC +G+rC+FaHg
  Pp3c1_22180V3.1.p 335 FKTKLCENFSK-GTCTFGERCHFAHG 359
                        69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.2966593IPR000571Zinc finger, CCCH-type
SMARTSM003561.16592IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-66690IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-76790IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.671134162IPR000571Zinc finger, CCCH-type
SMARTSM003560.045134161IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-7135165IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-5135161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-12135166IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.07E-13239317IPR004088K Homology domain, type 1
SMARTSM003224.4E-11247317IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.104.8E-15247316IPR004088K Homology domain, type 1
PROSITE profilePS5008414.739248312IPR004088K Homology domain, type 1
CDDcd001058.19E-14250312No hitNo description
PfamPF000136.7E-11250313IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.8E-15332366IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-8333364IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.718334361IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-7334360IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-9335359IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MVTVIFAADL MCDFSNRVLA SNLDMDPYGP PRKRPRPESG PLNGSNGTNS GHGGGDDYNK  60
DGSSGNRTKP CTKFFSTSGC PYGEGCHFLH FVPGGVQSMG GLAPLANISS MGGGGARKVV  120
GGVGLDDQGA NLGGFKTRLC NRFDTPEGCR FSDKCHFAHG EKELRKSSNN FNTPSVERDS  180
YARQDYSRDQ GPSSASYRGG SGSGMYGTNG GRFGSGGPGG RDREASRFGS YREPTPPGMA  240
AANSFGASST AKISIEASLA GAIIGKGGIN AKQICRLTGA KLSIKEHETD AGLRNVEMEG  300
SFEQIKQASQ MVRHVLIHRD SVPARPPAGA VSHNFKTKLC ENFSKGTCTF GERCHFAHGA  360
EDLRDPYRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13236KRPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.124310.0protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024386818.10.0zinc finger CCCH domain-containing protein 14-like
RefseqXP_024386826.10.0zinc finger CCCH domain-containing protein 14-like
RefseqXP_024386832.10.0zinc finger CCCH domain-containing protein 14-like
RefseqXP_024386840.10.0zinc finger CCCH domain-containing protein 14-like
TrEMBLA0A2K1L9590.0A0A2K1L959_PHYPA; Uncharacterized protein
STRINGPP1S59_351V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.15e-30C3H family protein