PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c1_21610V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | MYB | ||||||||
Protein Properties | Length: 401aa MW: 43947.2 Da PI: 5.4291 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.8 | 5.2e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++lv ++q+G g+W+t +++ g++R++k+c++rw +yl Pp3c1_21610V3.1.p 14 RGPWTPEEDDKLVTWIAQYGAGSWRTLPKRAGLRRCGKSCRLRWTNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.4 | 4.4e-15 | 68 | 110 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 gr+++ E++l+v++++ lG++ W++Ia+ ++ gRt++++k++w++ Pp3c1_21610V3.1.p 68 GRFSEYEEQLIVHLHATLGSR-WSLIAAQLP-GRTDNDVKNYWNS 110 89*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.892 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.3E-28 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.76E-11 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.181 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.1E-13 | 68 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.07E-9 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MGRAPCCEND TVKRGPWTPE EDDKLVTWIA QYGAGSWRTL PKRAGLRRCG KSCRLRWTNY 60 LRPDLKHGRF SEYEEQLIVH LHATLGSRWS LIAAQLPGRT DNDVKNYWNS RLKRKLCEMG 120 IDPITHKPIS QLLADLAGSE ALLQGGEVAE AALGCFKDDM LDILIRQRSE GSDIDQSAGT 180 HELTTRQPPL MFAASRSCVL QSDPVGANVR STITNDRHNS TFTSRNFEWA VVDDNNYSLA 240 KSTQTNEVQQ YGEVMNSREG SNSQNLAVPS CRLFPQDTAS EGSKFSTTAC NLSSLESPIL 300 VNAPTTVTNL LCDPLAVSWS CHIQDMQRES ITGCVSGIQD LAGRVTVLGS SSLPSPCHSD 360 HSSTTSGITS LVNGDVEGLE TVFSSDVFLW DFPELSCILS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-28 | 14 | 116 | 7 | 108 | B-MYB |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024372868.1 | 0.0 | transcription factor MYB20-like | ||||
TrEMBL | A0A2K1L927 | 0.0 | A0A2K1L927_PHYPA; Uncharacterized protein | ||||
STRING | PP1S257_83V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56110.1 | 1e-84 | myb domain protein 103 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c1_21610V3.1.p |