PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_21370V3.2.p
Common NamePHYPADRAFT_94249
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 341aa    MW: 38413.5 Da    PI: 5.502
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_21370V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.9e-09317338122
                        --S---SGGGGTS--TTTTT-S CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCk 22 
                        yktelCr + +tG+C+y ++C+
  Pp3c1_21370V3.2.p 317 YKTELCRSWEETGYCRYASKCQ 338
                        9********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.2E-9315338IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.73E-5315338IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.005316338IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-5317338IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MNCYQNQSEE GTVFQMAPEC RSSAPEPYHP LPISHTVTQS SNLHFPKQCQ FRSETEPPSI  60
AEAIFSSSGD DTNYFLLENT QLSMDSSLHC SRVCKCGHQQ SEVSNPLRFR SFLGYLPEVE  120
EEMSMPFPYS EHGSNISPPE VEFRYSYPQS LQGMGSGTTE NKYGIIFSDT SNLGVRSSTG  180
IPYFSTNTDE DHQRLEQDSS LNSSPSCCTL QTRSHEERKL LVYTPGNYPC REPDKFGVYN  240
CDVSFLDSIY GCRNPHHEGM HSLGFNIHFQ RHQSIHTPSM IRSKQPMCNS GSELPSSSSL  300
SVSSDEMEHP QIKVGLYKTE LCRSWEETGY CRYASKCQVI *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024387074.10.0uncharacterized protein LOC112287824
TrEMBLA0A2K1L9160.0A0A2K1L916_PHYPA; Uncharacterized protein
TrEMBLA9TLB80.0A9TLB8_PHYPA; Predicted protein
STRINGPP1S257_59V6.10.0(Physcomitrella patens)
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]