PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_21370V3.1.p
Common NamePHYPADRAFT_94249
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 420aa    MW: 47617.9 Da    PI: 6.8045
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_21370V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH42.21.3e-13317342126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        yktelCr + +tG+C+y ++C+FaHg
  Pp3c1_21370V3.1.p 317 YKTELCRSWEETGYCRYASKCQFAHG 342
                        9************************8 PP
2zf-CCCH38.81.5e-12355379125
                        --S---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                        yktelCr + +tG C+yG rC+F+H
  Pp3c1_21370V3.1.p 355 YKTELCRSYTETGLCNYGKRCRFIH 379
                        9************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.97E-10314349IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-18315349IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-8316343IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.563316344IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-10317342IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-14350380IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-9351381IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-8354381IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544354382IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9355379IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MNCYQNQSEE GTVFQMAPEC RSSAPEPYHP LPISHTVTQS SNLHFPKQCQ FRSETEPPSI  60
AEAIFSSSGD DTNYFLLENT QLSMDSSLHC SRVCKCGHQQ SEVSNPLRFR SFLGYLPEVE  120
EEMSMPFPYS EHGSNISPPE VEFRYSYPQS LQGMGSGTTE NKYGIIFSDT SNLGVRSSTG  180
IPYFSTNTDE DHQRLEQDSS LNSSPSCCTL QTRSHEERKL LVYTPGNYPC REPDKFGVYN  240
CDVSFLDSIY GCRNPHHEGM HSLGFNIHFQ RHQSIHTPSM IRSKQPMCNS GSELPSSSSL  300
SVSSDEMEHP QIKVGLYKTE LCRSWEETGY CRYASKCQFA HGNDDLRPVP RHPKYKTELC  360
RSYTETGLCN YGKRCRFIHT SNTHKPIFTQ SRELEKKGSR RLSIFQQLSG AGEMPRRQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-22317382469Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024387074.10.0uncharacterized protein LOC112287824
TrEMBLA9TLB80.0A9TLB8_PHYPA; Predicted protein
STRINGPP1S257_59V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP20581636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.16e-23C3H family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]