PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c1_20230V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C2H2 | ||||||||
Protein Properties | Length: 628aa MW: 65963.2 Da PI: 10.5788 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.8 | 1.8e-05 | 86 | 108 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pp3c1_20230V3.3.p 86 FVCEICNKGFQRDQNLQLHRRGH 108 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.4 | 0.00048 | 162 | 184 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Pp3c1_20230V3.3.p 162 WKCDKCSKRYAVQSDWKAHSKTC 184 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.1E-5 | 85 | 108 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.82E-7 | 85 | 108 | No hit | No description |
PROSITE profile | PS50157 | 10.949 | 86 | 108 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 86 | 108 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 88 | 108 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 127 | 157 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.2E-4 | 150 | 183 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.82E-7 | 157 | 182 | No hit | No description |
SMART | SM00355 | 140 | 162 | 182 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 628 aa Download sequence Send to blast |
MTLSNLTSAS AGDASVSSGN RTDGTNPGMP PTSSTPATPT TTTVTVSSVQ PLAVAVKRKR 60 NLPGTPDPEA EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTSK 120 EIRKRVYICP EPSCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH 180 SKTCGTREYR CDCGTLFSRR DSFITHRAFC DALAEESARV SAGKQGGEQP NGLMGPRSSS 240 LSVVGAPSSP RGNDVGITSG DPMASAGPLA SRSGSLPPSM AGLSGLNDLS RWCGTPGSGP 300 VSRTGTGLSL WLGPGPGPPG SQQQMHQLLS GSNGSSSFLM QTRKGMQGGD GLSGMMNPLE 360 YDAPQASRPS SDHIPLIPSG NLYSHLFASG NGLQGIQGSS PSQSGGTAGM SISGFSDFTP 420 GANRMERGSV TAGLSSTSSP RMTSNSSSGN TNGGGNLSSV SPLFNAQQQQ QQQQHHNSSA 480 QMSATALLQK AAQMGATVSN SSLLRGFGLG GADSNSMGMW QVQRQEQQQR QQSQQPQQSQ 540 QQSQTQPQHQ QQSRSQPQQQ QQQGRTGGVS GITAAGGGMG RTLSPRDLAS IASLGSGVDL 600 GAFFNQRDNL RSVGASGRSP GKSWDAN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 5e-35 | 158 | 222 | 3 | 67 | Zinc finger protein JACKDAW |
5b3h_F | 5e-35 | 158 | 222 | 3 | 67 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.13110 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024381314.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like isoform X2 | ||||
TrEMBL | A0A2K1L8X6 | 0.0 | A0A2K1L8X6_PHYPA; Uncharacterized protein | ||||
STRING | PP1S43_228V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 1e-114 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c1_20230V3.3.p |