PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_20230V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 778aa    MW: 81213 Da    PI: 10.5718
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_20230V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-0586108123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C++C+k F r  nL+ H r H
  Pp3c1_20230V3.1.p  86 FVCEICNKGFQRDQNLQLHRRGH 108
                        89******************988 PP
2zf-C2H2120.00062162184123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k++  +s+ k H +t+
  Pp3c1_20230V3.1.p 162 WKCDKCSKRYAVQSDWKAHSKTC 184
                        58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.33E-785108No hitNo description
Gene3DG3DSA:3.30.160.602.7E-585108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.94986108IPR007087Zinc finger, C2H2
SMARTSM003550.01786108IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
SMARTSM00355220127157IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.2E-4150183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.33E-7157182No hitNo description
SMARTSM00355140162182IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MTLSNLTSAS AGDASVSSGN RTDGTNPGMP PTSSTPATPT TTTVTVSSVQ PLAVAVKRKR  60
NLPGTPDPEA EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTSK  120
EIRKRVYICP EPSCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH  180
SKTCGTREYR CDCGTLFSRR DSFITHRAFC DALAEESARV SAGKQGGEQP NGLMGPRSSS  240
LSVVGAPSSP RGNDVGITSG DPMASAGPLA SRSGSLPPSM AGLSGLNDLS RWCGTPGSGP  300
VSRTGTGLSL WLGPGPGPPG SQQQMHQLLS GSNGSSSFLM QTRKGMQGGD GLSGMMNPLE  360
YDAPQASRPS SDHIPLIPSG NLYSHLFASG NGLQGIQGSS PSQSGGTAGM SISGFSDFTP  420
GANRMERGSV TAGLSSTSSP RMTSNSSSGN TNGGGNLSSV SPLFNAQQQQ QQQQHHNSSA  480
QMSATALLQK AAQMGATVSN SSLLRGFGLG GADSNSMGMW QVQRQEQQQR QQSQQPQQSQ  540
QQSQTQPQHQ QQSRSQPQQQ QQQGRTGDLP LNNMSNMVNH PLTRRPSDLQ NVSQGLGGSS  600
IGQRNSFGGG QGRLSDNSAN VQDLMNSLSG GAGLFGAPLS SLPSSVFGPN STSMGGMLPP  660
GTQRMSSGEV FANSTFTGGQ GVLQGMSSSS LLPGLGGSSR RENDGSDRFT RDFLGVGGVS  720
GITAAGGGMG RTLSPRDLAS IASLGSGVDL GAFFNQRDNL RSVGASGRSP GKSWDAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-35158222367Zinc finger protein JACKDAW
5b3h_F1e-35158222367Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.16440.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024381305.10.0protein indeterminate-domain 5, chloroplastic-like isoform X1
TrEMBLA0A2K1L8X60.0A0A2K1L8X6_PHYPA; Uncharacterized protein
STRINGPP1S43_228V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-113C2H2 family protein