PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c1_19660V3.9.p | ||||||||
Common Name | PHYPADRAFT_162465 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | MYB_related | ||||||||
Protein Properties | Length: 674aa MW: 73047.9 Da PI: 6.8196 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.8 | 2.5e-08 | 564 | 612 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E lv++v++ Ggg W+ I + Rt+ ++k++w+++l Pp3c1_19660V3.9.p 564 PWTLREVMTLVEGVARCGGGKWADIKKLAFsnvGYRTAVDLKDKWRNLL 612 8**************************98888889************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.135 | 557 | 616 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-12 | 558 | 614 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-7 | 561 | 614 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.42E-15 | 563 | 616 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 3.08E-20 | 563 | 613 | No hit | No description |
Pfam | PF00249 | 1.8E-6 | 564 | 612 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0031627 | Biological Process | telomeric loop formation | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0000783 | Cellular Component | nuclear telomere cap complex | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 674 aa Download sequence Send to blast |
MLEATEDGSD SRLASSGREE SPAATSKPNV DDRLVYKLVK VGDDGSVLPA TEDEVFQSLV 60 SGSGNGLSSF DADESGDGED DEEDEEEDDE RTEYDTDDEP DERARNIPFQ DLAAQRQKLR 120 ARLQVLDSML LQVDAAEQER MAAERDASEN DLGHKDIFSP YFSAADGSGD KRQRRPNPKY 180 FGFEAGEDGA SGQPALSSSS GEPILTPTKE AAVSPRVTSG WGSHRSSVRS ASTHRARSAV 240 TQKPFTRTGT KVVSPVSLAS GIRSAAHEEV SLENLSIREL HEAFRATYGR DTSVKDKHWL 300 KRQISAGWMG QREAAFKPQP PVSSKLKIRL EEDDHAEQPL PSVGLTSVGA VERDAANEAK 360 TGAESLKDSA WNSLEGEPVG GKRQRKPNRR YIEDETEGSP GFIPTNDNRS LYGESGGNGM 420 DSSANFTWRT VETDGPADMI GRHGTLRGPT IRNASNKNVS AAQRPKIVGG IAKRKLEGRA 480 STLVKMADPA RPTRQDTEGK VRKDGLSESN GGAGDRVSVL MPIVPFDPSA ILQPLPLDSR 540 PENDLPIATV PTANGGTRRK HHRPWTLREV MTLVEGVARC GGGKWADIKK LAFSNVGYRT 600 AVDLKDKWRN LLRASRAQLH PAKQGERKKQ FTAAIPAPIL ARVRELAALQ NQISPTAGTG 660 SSTIRSGRTV HRK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.4846 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024367316.1 | 0.0 | uncharacterized protein LOC112278048 isoform X3 | ||||
TrEMBL | A0A2K1L8R1 | 0.0 | A0A2K1L8R1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S43_165V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 2e-43 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c1_19660V3.9.p |
Entrez Gene | 5923705 |
Publications ? help Back to Top | |||
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