PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_19660V3.3.p
Common NamePHYPADRAFT_162465
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 674aa    MW: 73047.9 Da    PI: 6.8196
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_19660V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.5e-08564612348
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                        +WT  E   lv++v++ Ggg W+ I +        Rt+ ++k++w+++l
  Pp3c1_19660V3.3.p 564 PWTLREVMTLVEGVARCGGGKWADIKKLAFsnvGYRTAVDLKDKWRNLL 612
                        8**************************98888889************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.135557616IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-12558614IPR009057Homeodomain-like
SMARTSM007171.7E-7561614IPR001005SANT/Myb domain
SuperFamilySSF466891.42E-15563616IPR009057Homeodomain-like
CDDcd116603.08E-20563613No hitNo description
PfamPF002491.8E-6564612IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0031627Biological Processtelomeric loop formation
GO:0046686Biological Processresponse to cadmium ion
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MLEATEDGSD SRLASSGREE SPAATSKPNV DDRLVYKLVK VGDDGSVLPA TEDEVFQSLV  60
SGSGNGLSSF DADESGDGED DEEDEEEDDE RTEYDTDDEP DERARNIPFQ DLAAQRQKLR  120
ARLQVLDSML LQVDAAEQER MAAERDASEN DLGHKDIFSP YFSAADGSGD KRQRRPNPKY  180
FGFEAGEDGA SGQPALSSSS GEPILTPTKE AAVSPRVTSG WGSHRSSVRS ASTHRARSAV  240
TQKPFTRTGT KVVSPVSLAS GIRSAAHEEV SLENLSIREL HEAFRATYGR DTSVKDKHWL  300
KRQISAGWMG QREAAFKPQP PVSSKLKIRL EEDDHAEQPL PSVGLTSVGA VERDAANEAK  360
TGAESLKDSA WNSLEGEPVG GKRQRKPNRR YIEDETEGSP GFIPTNDNRS LYGESGGNGM  420
DSSANFTWRT VETDGPADMI GRHGTLRGPT IRNASNKNVS AAQRPKIVGG IAKRKLEGRA  480
STLVKMADPA RPTRQDTEGK VRKDGLSESN GGAGDRVSVL MPIVPFDPSA ILQPLPLDSR  540
PENDLPIATV PTANGGTRRK HHRPWTLREV MTLVEGVARC GGGKWADIKK LAFSNVGYRT  600
AVDLKDKWRN LLRASRAQLH PAKQGERKKQ FTAAIPAPIL ARVRELAALQ NQISPTAGTG  660
SSTIRSGRTV HRK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.48460.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024367316.10.0uncharacterized protein LOC112278048 isoform X3
TrEMBLA0A2K1L8R10.0A0A2K1L8R1_PHYPA; Uncharacterized protein
STRINGPP1S43_165V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-43TRF-like 6
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]