PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c1_15560V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | GRAS | ||||||||
Protein Properties | Length: 819aa MW: 90248 Da PI: 5.143 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 437.4 | 1e-133 | 434 | 797 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 lv+lL++cAeavs+++l+l+++lL++l e+asp+g++mqR+aayfte+La r+a+ ++++y+ lp+ ++ n ++ +a++l+++v P+ k Pp3c1_15560V3.2.p 434 LVTLLIACAEAVSTQSLSLVNHLLQKLGEHASPQGTAMQRVAAYFTEGLACRVAHLWPHVYQPLPTHSNL--NDEQLQTAFHLLNHVVPYTK 523 6789*********************************************************999887776..4566667999********** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183 f+h+t N Il+a++g++rvH+iDfdi+qGlQWpaL+q+La+R+ gpp ++RiTg+g+ k+ l etg+rLa+fAee+++pf+f++ v Pp3c1_15560V3.2.p 524 FAHFTVNDIILQAFNGADRVHVIDFDIKQGLQWPALFQSLAERECGPPsHIRITGIGE----CKDDLLETGDRLAEFAEEFNIPFSFHA-VI 610 ********************************************66665*********....***************************.7* PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275 +rled++l++L+vk++Ea+aVn++ q hrll +s+++ + ++L+l+ s++P+vv +veqe +hns+ F rfle+l+yysa+fdslea+l Pp3c1_15560V3.2.p 611 DRLEDVRLWMLHVKENEAVAVNCISQFHRLLYDSGETIK---DFLNLIGSTKPRVVAIVEQEGSHNSPHFEGRFLESLKYYSAIFDSLEANL 699 *******************************99999999...9************************************************* PP GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367 +res r+ vE+ ++ ei+n+++cegaer+erhe ++W+ l+++ F +vpl+++a++qa+ llr+++sdgy++ e+gsl+lgW ++pL Pp3c1_15560V3.2.p 700 SRESCVRVQVEQL-FALEIRNILSCEGAERVERHEDTARWSVLLSQSDFVNVPLEDSANTQAQILLRMFDSDGYTLTAENGSLTLGWVEQPL 790 ***********98.****************************************************************************** PP GRAS 368 vsvSaWr 374 ++vSaW+ Pp3c1_15560V3.2.p 791 LTVSAWK 797 ******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 61.731 | 408 | 777 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.6E-131 | 434 | 797 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 819 aa Download sequence Send to blast |
MREIGVLEYG EMLYTGELDE LFRLPAVKTG RSSSPSLPCS NASSQYGLHS QRSELGLSGS 60 PSHRGGMSGN NRVLLPGKFV LKKGLEPWST VERRGEQLSS TDPAGSPSFR RAGTTMWPDK 120 TSTACEAETS TGQWTSPRCG EDPRNEGDLI HFHQHQNQST SNSPLCPGTP IRHHYSQMAP 180 SSPLQIISSP DVKKCIAPMS EPRSVLDLTI SPQQHQLPTI RATLPRRFRE TFLEHNVAPV 240 TAPSLSPSPR VLNFESCSNG STKSGTFADQ YGPSPTNAST WAPDLATQGY PTSIPTHKVE 300 ELPVLPTAQS FIQETSSLDE WEAATITSPQ HKLRAKQWMV SLMEDLRNAE DANSAQETEE 360 CTTPFTPGVD SCAPYFLTSQ NGLGSPCPSD YTGDDTPRGS RLEHLQVESP CGTPRGGGDG 420 EDAQNSPVMV GHELVTLLIA CAEAVSTQSL SLVNHLLQKL GEHASPQGTA MQRVAAYFTE 480 GLACRVAHLW PHVYQPLPTH SNLNDEQLQT AFHLLNHVVP YTKFAHFTVN DIILQAFNGA 540 DRVHVIDFDI KQGLQWPALF QSLAERECGP PSHIRITGIG ECKDDLLETG DRLAEFAEEF 600 NIPFSFHAVI DRLEDVRLWM LHVKENEAVA VNCISQFHRL LYDSGETIKD FLNLIGSTKP 660 RVVAIVEQEG SHNSPHFEGR FLESLKYYSA IFDSLEANLS RESCVRVQVE QLFALEIRNI 720 LSCEGAERVE RHEDTARWSV LLSQSDFVNV PLEDSANTQA QILLRMFDSD GYTLTAENGS 780 LTLGWVEQPL LTVSAWKPDK DFVLTGKSLV TNEKQQAV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 8e-82 | 441 | 798 | 26 | 380 | Protein SCARECROW |
5b3h_A | 7e-82 | 441 | 798 | 25 | 379 | Protein SCARECROW |
5b3h_D | 7e-82 | 441 | 798 | 25 | 379 | Protein SCARECROW |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.10958 | 1e-101 | gametophore |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024394262.1 | 0.0 | scarecrow-like protein 28 | ||||
Refseq | XP_024394277.1 | 0.0 | scarecrow-like protein 28 | ||||
TrEMBL | A0A2K1L8B7 | 0.0 | A0A2K1L8B7_PHYPA; Uncharacterized protein | ||||
STRING | PP1S63_198V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63100.1 | 1e-120 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c1_15560V3.2.p |