PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c1_15560V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

GRAS

Protein Properties

Length: 819aa MW: 90248 Da PI: 5.143

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c1_15560V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	437.4	1e-133	434	797	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 lv+lL++cAeavs+++l+l+++lL++l e+asp+g++mqR+aayfte+La r+a+ ++++y+ lp+ ++ n ++ +a++l+++v P+ k Pp3c1_15560V3.1.p 434 LVTLLIACAEAVSTQSLSLVNHLLQKLGEHASPQGTAMQRVAAYFTEGLACRVAHLWPHVYQPLPTHSNL--NDEQLQTAFHLLNHVVPYTK 523 6789*******************************************************999887776..4566667999****** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183 f+h+t N Il+a++g++rvH+iDfdi+qGlQWpaL+q+La+R+ gpp ++RiTg+g+ k+ l etg+rLa+fAee+++pf+f++ v Pp3c1_15560V3.1.p 524 FAHFTVNDIILQAFNGADRVHVIDFDIKQGLQWPALFQSLAERECGPPsHIRITGIGE----CKDDLLETGDRLAEFAEEFNIPFSFHA-VI 610 ****************************************66665*****....************************.7 PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275 +rled++l++L+vk++Ea+aVn++ q hrll +s+++ + ++L+l+ s++P+vv +veqe +hns+ F rfle+l+yysa+fdslea+l Pp3c1_15560V3.1.p 611 DRLEDVRLWMLHVKENEAVAVNCISQFHRLLYDSGETIK---DFLNLIGSTKPRVVAIVEQEGSHNSPHFEGRFLESLKYYSAIFDSLEANL 699 *****************************99999999...9********************************************* PP GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367 +res r+ vE+ ++ ei+n+++cegaer+erhe ++W+ l+++ F +vpl+++a++qa+ llr+++sdgy++ e+gsl+lgW ++pL Pp3c1_15560V3.1.p 700 SRESCVRVQVEQL-FALEIRNILSCEGAERVERHEDTARWSVLLSQSDFVNVPLEDSANTQAQILLRMFDSDGYTLTAENGSLTLGWVEQPL 790 *******98.************************************************************************** PP GRAS 368 vsvSaWr 374 ++vSaW+ Pp3c1_15560V3.1.p 791 LTVSAWK 797 ****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.731	408	777	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.6E-131	434	797	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 819 aa Download sequence Send to blast
MREIGVLEYG EMLYTGELDE LFRLPAVKTG RSSSPSLPCS NASSQYGLHS QRSELGLSGS 60 PSHRGGMSGN NRVLLPGKFV LKKGLEPWST VERRGEQLSS TDPAGSPSFR RAGTTMWPDK 120 TSTACEAETS TGQWTSPRCG EDPRNEGDLI HFHQHQNQST SNSPLCPGTP IRHHYSQMAP 180 SSPLQIISSP DVKKCIAPMS EPRSVLDLTI SPQQHQLPTI RATLPRRFRE TFLEHNVAPV 240 TAPSLSPSPR VLNFESCSNG STKSGTFADQ YGPSPTNAST WAPDLATQGY PTSIPTHKVE 300 ELPVLPTAQS FIQETSSLDE WEAATITSPQ HKLRAKQWMV SLMEDLRNAE DANSAQETEE 360 CTTPFTPGVD SCAPYFLTSQ NGLGSPCPSD YTGDDTPRGS RLEHLQVESP CGTPRGGGDG 420 EDAQNSPVMV GHELVTLLIA CAEAVSTQSL SLVNHLLQKL GEHASPQGTA MQRVAAYFTE 480 GLACRVAHLW PHVYQPLPTH SNLNDEQLQT AFHLLNHVVP YTKFAHFTVN DIILQAFNGA 540 DRVHVIDFDI KQGLQWPALF QSLAERECGP PSHIRITGIG ECKDDLLETG DRLAEFAEEF 600 NIPFSFHAVI DRLEDVRLWM LHVKENEAVA VNCISQFHRL LYDSGETIKD FLNLIGSTKP 660 RVVAIVEQEG SHNSPHFEGR FLESLKYYSA IFDSLEANLS RESCVRVQVE QLFALEIRNI 720 LSCEGAERVE RHEDTARWSV LLSQSDFVNV PLEDSANTQA QILLRMFDSD GYTLTAENGS 780 LTLGWVEQPL LTVSAWKPDK DFVLTGKSLV TNEKQQAV*

Sequence ? help Back to Top

Protein Sequence Length: 819 aa Download sequence Send to blast

MREIGVLEYG EMLYTGELDE LFRLPAVKTG RSSSPSLPCS NASSQYGLHS QRSELGLSGS  60
PSHRGGMSGN NRVLLPGKFV LKKGLEPWST VERRGEQLSS TDPAGSPSFR RAGTTMWPDK  120
TSTACEAETS TGQWTSPRCG EDPRNEGDLI HFHQHQNQST SNSPLCPGTP IRHHYSQMAP  180
SSPLQIISSP DVKKCIAPMS EPRSVLDLTI SPQQHQLPTI RATLPRRFRE TFLEHNVAPV  240
TAPSLSPSPR VLNFESCSNG STKSGTFADQ YGPSPTNAST WAPDLATQGY PTSIPTHKVE  300
ELPVLPTAQS FIQETSSLDE WEAATITSPQ HKLRAKQWMV SLMEDLRNAE DANSAQETEE  360
CTTPFTPGVD SCAPYFLTSQ NGLGSPCPSD YTGDDTPRGS RLEHLQVESP CGTPRGGGDG  420
EDAQNSPVMV GHELVTLLIA CAEAVSTQSL SLVNHLLQKL GEHASPQGTA MQRVAAYFTE  480
GLACRVAHLW PHVYQPLPTH SNLNDEQLQT AFHLLNHVVP YTKFAHFTVN DIILQAFNGA  540
DRVHVIDFDI KQGLQWPALF QSLAERECGP PSHIRITGIG ECKDDLLETG DRLAEFAEEF  600
NIPFSFHAVI DRLEDVRLWM LHVKENEAVA VNCISQFHRL LYDSGETIKD FLNLIGSTKP  660
RVVAIVEQEG SHNSPHFEGR FLESLKYYSA IFDSLEANLS RESCVRVQVE QLFALEIRNI  720
LSCEGAERVE RHEDTARWSV LLSQSDFVNV PLEDSANTQA QILLRMFDSD GYTLTAENGS  780
LTLGWVEQPL LTVSAWKPDK DFVLTGKSLV TNEKQQAV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	8e-82	441	798	26	380	Protein SCARECROW
5b3h_A	7e-82	441	798	25	379	Protein SCARECROW
5b3h_D	7e-82	441	798	25	379	Protein SCARECROW

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.10958	1e-101	gametophore

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024394262.1	0.0	scarecrow-like protein 28
Refseq	XP_024394277.1	0.0	scarecrow-like protein 28
TrEMBL	A0A2K1L8B7	0.0	A0A2K1L8B7_PHYPA; Uncharacterized protein
STRING	PP1S63_198V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5507	15	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	1e-120	GRAS family protein

Link Out ? help Back to Top
Phytozome	Pp3c1_15560V3.1.p