PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c1_14230V3.1.p

Common Name

PHYPADRAFT_233473

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

ERF

Protein Properties

Length: 192aa MW: 21970.9 Da PI: 10.0807

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c1_14230V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	37.3	6.6e-12	44	88	2	48
AP2 2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaia 48 ++kG+r+++ gr+ +eIr ++++++lg+f taeeAa+a +a Pp3c1_14230V3.1.p 44 RFKGIRFRPELGRYISEIRP----AhpRKRKIWLGTFKTAEEAARAFDA 88 69*************998....33456***************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	14.223	44	105	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.81E-12	44	96	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.2E-16	44	103	IPR001471	AP2/ERF domain
CDD	cd00018	4.59E-14	44	91	No hit	No description
Pfam	PF00847	1.8E-6	44	87	IPR001471	AP2/ERF domain
SMART	SM00380	1.8E-9	44	108	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MPAQATQCVT TGRYGEDHDA GCHTTSPTRS SILELTHHVV QQERFKGIRF RPELGRYISE 60 IRPAHPRKRK IWLGTFKTAE EAARAFDAGI FYTKKPIDYN FKESPLILEP LPENLSPEQE 120 HIEIQKRAKA AAARIEPSHS KPHSPDKSCK FLQSNSTQRS SARRIGHEVE HLLDRKQRPR 180 EIQFLEVLNR S*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.10980	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024401788.1	1e-67	ethylene-responsive transcription factor RAP2-9-like
TrEMBL	A0A2K1L8A5	1e-139	A0A2K1L8A5_PHYPA; Uncharacterized protein
STRING	PP1S86_33V6.1	1e-139	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G15360.1	4e-13	ERF family protein

Link Out ? help Back to Top
Phytozome	Pp3c1_14230V3.1.p
Entrez Gene	5929825

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]