PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c1_1300V3.1.p

Common Name

PHYPADRAFT_90712

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Dof

Protein Properties

Length: 314aa MW: 35239.7 Da PI: 4.7726

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c1_1300V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	28.1	4.4e-09	80	111	6	36
zf-Dof 6 lkcprCdstn.tkfCyynnyslsqPryfCkaC 36 +kc++C+ n +kf yynn +l+qPry C C Pp3c1_1300V3.1.p 80 KKCTKCKVLNkAKFMYYNNKNLAQPRYQCLVC 111 69***86538***************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.1E-6	14	51	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-8	80	113	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MRRVAVEPPE FVHQIKTCTK CGSVNKCKFR YLNNGKQNQP RYQCWVCNDF FSHVLHGRPK 60 GKKYLKPRGV DPKELQGVVK KCTKCKVLNK AKFMYYNNKN LAQPRYQCLV CLQEFQVHLN 120 VLLQSGGSKQ GDTPNAINML PQSGGSPQDG SPNDVSRMLE VVAALANSFR AQQCGNFSQT 180 DELGNPRQPV DTSGNPTQPA DESENPVLAH ESKYLELTHE FDNPMQEASE LDMLLQEDDL 240 ENPMQQASEF DILLQEDDLE NPMQAVCIDV LLPTPTLAPA DGFYNLLPTD GFDDSKQIDD 300 EFNNFLQSMG FDL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9TBU3	0.0	A9TBU3_PHYPA; Predicted protein
STRING	PP1S200_73V6.1	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c1_1300V3.1.p
Entrez Gene	5939263

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]