PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c1_12940V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 696aa    MW: 74376.9 Da    PI: 6.225
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c1_12940V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.45.9e-09100124226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        +++ C +++ t tC++G +C++ H+
  Pp3c1_12940V3.1.p 100 GEKVCAYYMITRTCSFGVTCRYDHP 124
                        7889********************8 PP
2zf-CCCH38.71.7e-12156180327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        ++ C +f++tG+C+yG++C+F+H++
  Pp3c1_12940V3.1.p 156 EPDCAYFMKTGECRYGSKCRFNHPK 180
                        689********************96 PP
3zf-CCCH24.93.6e-08220242527
                        --SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                        +C f+ +tG CkyG  C+++H++
  Pp3c1_12940V3.1.p 220 NCVFYGKTGSCKYGTACRYNHPE 242
                        79*******************96 PP
4zf-CCCH35.51.6e-11563589127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++ C f+ +tG+C++G++CkF+H+p
  Pp3c1_12940V3.1.p 563 PGEPDCTFYIKTGECSFGATCKFHHPP 589
                        5789*********************97 PP
5zf-CCCH31.72.7e-10620643427
                        ---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         +C ++++tG Ck+G +Ck+ H+p
  Pp3c1_12940V3.1.p 620 TPCAYYMKTGACKFGQTCKYDHPP 643
                        69********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.87398126IPR000571Zinc finger, CCCH-type
SMARTSM003560.01998125IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6100124IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5153180IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.704153181IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-10156180IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6158183IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-6159181IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.427215243IPR000571Zinc finger, CCCH-type
SMARTSM003560.014215242IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-5220242IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-5562589IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99562590IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-8564589IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5566590IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-4568588IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793616644IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4616643IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5619644IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-8620643IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4621641IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MATASQQVVY AMATPPHGVV QYEYYTHQVP QTTTTYTTPG QYSGSGPPPP GASAMDHCAD  60
SAAKRSSDEV TADTIGPNKK PRSDSAGCSG ENGLYPQRPG EKVCAYYMIT RTCSFGVTCR  120
YDHPAWVPAG GIPSWKEVTA VGTPVDPSSL PQRPTEPDCA YFMKTGECRY GSKCRFNHPK  180
EKLESSNTDE QSSVVNQAAP INPATTFNSK GLPLRPGEGN CVFYGKTGSC KYGTACRYNH  240
PEILLPGGRT GQTLQPQQAV YVQTPQQPSV QYQLVQASHD YAYPATTYQS TTPSYTTAPN  300
AYPVTTTYSS TAPAYASPAT TYPGQQVITE YVYPGGATMQ VYPSGATTQC YPPGTPTQTY  360
SQAQTYPQGT IVQQYPQGTT TQVLSQVQSY PPGTTCQTYP PGTTTQAQPQ TYPPGTTGAS  420
TYPPGTPQSC PGTQTFPPGT PNQSQGQTAQ IYPPGTTAQG VEYAYSGGQQ PQSQLEYVYA  480
TQQASQNGTD YVYSTEQPAQ SASDQYTTTA YATDVSGQAT TADYAYTSTQ NSQEYAYAAA  540
QAYHQNVTPM YVASMGLPHP QRPGEPDCTF YIKTGECSFG ATCKFHHPPD RIPSGIPKPA  600
KNQATVKLSL AGLPRRETET PCAYYMKTGA CKFGQTCKYD HPPPQEIIAR AVEQARGEVP  660
SSYDVNMPTS VASDSQDVTP LPPGTDVPAV TAAAM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.35060.0protonema| sporophyte
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024369139.10.0zinc finger CCCH domain-containing protein 63-like isoform X4
TrEMBLA0A2K1L7Z10.0A0A2K1L7Z1_PHYPA; Uncharacterized protein
STRINGPP1S86_197V6.20.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP67541519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.15e-47floral homeotic protein (HUA1)