PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c19_6370V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 337aa    MW: 37198.1 Da    PI: 5.8539
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c19_6370V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.7e-174695255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++GVr++  +g+WvAeIr+p++   r r +lg+f ta+eAa a++ a++k++g
  Pp3c19_6370V3.2.p 46 EFRGVRQRT-WGKWVAEIREPKK---RVRLWLGSFPTAKEAALAYDIAARKFYG 95
                       59****999.**********965...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.79E-2945105No hitNo description
PROSITE profilePS5103222.14246103IPR001471AP2/ERF domain
PfamPF008471.4E-104695IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-2846104IPR001471AP2/ERF domain
SMARTSM003801.1E-3546109IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-1947104IPR016177DNA-binding domain
PRINTSPR003676.4E-94758IPR001471AP2/ERF domain
PRINTSPR003676.4E-96985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MHLGNQGNAR LSPTSGHIEK PPRKPGKRWK KGAMKGKGGP ENSACEFRGV RQRTWGKWVA  60
EIREPKKRVR LWLGSFPTAK EAALAYDIAA RKFYGPLAEL NLPAHESAGL DSVPSSKRTE  120
QSSSPPRKMH DVAIPELLEF PHHRPLETAV NVGSSGRTSL HIGIMEDFND DEIALANFDS  180
SIHDLDIRDI LLRETVGDSR GKVDPTPSPD VSTTSSSSLR VYPPQQRFPS APEFEQQQYY  240
SSQAERAGTF SSCEQPQDID RFLHQRDTYS IPSFRPDDYY DGASGSNSSS SPSIDSAGGS  300
YPAGVYWEDE DLGSQFLNLE LQSLDSALRE PLFSDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1447109669ATERF1
3gcc_A2e-1447109669ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024403617.10.0uncharacterized protein LOC112295846
TrEMBLA0A2K1IXH60.0A0A2K1IXH6_PHYPA; Uncharacterized protein
STRINGPP1S292_5V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-33ERF family protein