PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c19_6370V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 337aa MW: 37198.1 Da PI: 5.8539 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.6 | 2.7e-17 | 46 | 95 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr++ +g+WvAeIr+p++ r r +lg+f ta+eAa a++ a++k++g Pp3c19_6370V3.1.p 46 EFRGVRQRT-WGKWVAEIREPKK---RVRLWLGSFPTAKEAALAYDIAARKFYG 95 59****999.**********965...5************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.79E-29 | 45 | 105 | No hit | No description |
PROSITE profile | PS51032 | 22.142 | 46 | 103 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-10 | 46 | 95 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.2E-28 | 46 | 104 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-35 | 46 | 109 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-19 | 47 | 104 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.4E-9 | 47 | 58 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-9 | 69 | 85 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MHLGNQGNAR LSPTSGHIEK PPRKPGKRWK KGAMKGKGGP ENSACEFRGV RQRTWGKWVA 60 EIREPKKRVR LWLGSFPTAK EAALAYDIAA RKFYGPLAEL NLPAHESAGL DSVPSSKRTE 120 QSSSPPRKMH DVAIPELLEF PHHRPLETAV NVGSSGRTSL HIGIMEDFND DEIALANFDS 180 SIHDLDIRDI LLRETVGDSR GKVDPTPSPD VSTTSSSSLR VYPPQQRFPS APEFEQQQYY 240 SSQAERAGTF SSCEQPQDID RFLHQRDTYS IPSFRPDDYY DGASGSNSSS SPSIDSAGGS 300 YPAGVYWEDE DLGSQFLNLE LQSLDSALRE PLFSDC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-14 | 47 | 109 | 6 | 69 | ATERF1 |
3gcc_A | 2e-14 | 47 | 109 | 6 | 69 | ATERF1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024403617.1 | 0.0 | uncharacterized protein LOC112295846 | ||||
TrEMBL | A0A2K1IXH6 | 0.0 | A0A2K1IXH6_PHYPA; Uncharacterized protein | ||||
STRING | PP1S292_5V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 1e-33 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c19_6370V3.1.p |