PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c19_3000V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 534aa    MW: 59337.9 Da    PI: 6.4467
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c19_3000V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.23e-32332390159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +dDgy+WrKYGqK+vk+s++pr+YYrCt+++Cpv+k+vers+edp+ v++tYeg+H+h+
  Pp3c19_3000V3.1.p 332 MDDGYKWRKYGQKPVKSSPHPRNYYRCTTPNCPVRKRVERSTEDPDQVITTYEGRHTHQ 390
                        59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-33317392IPR003657WRKY domain
SuperFamilySSF1182901.06E-28325392IPR003657WRKY domain
PROSITE profilePS5081132.099327392IPR003657WRKY domain
SMARTSM007745.1E-37332391IPR003657WRKY domain
PfamPF031062.7E-25333390IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MERPTLPVEG ARKKAKIDYS QRIMLSPSDS RAASSQSSQI AACDDSCSYS LYGLNDSCDR  60
LPDTSPGLNP WSFCPPAREL RYLIPSASTE SEPSWKAISH DQREAFANFS WLAEDLREDN  120
LVNVAGPPIS GATSPRFCDF KACSEVGLSI RDSQDDLPDV CAATFPLSSP RDELAWAQTM  180
VELDKFEGFC RSDEPQREQS KSERQMSPTT SSAELRLEEV YHSQTPIDSA SLSSSFLSDS  240
KTSFKGRKRK SDTCGDFAAT ISAENKEQER SSEKESGEAN VHNEGDAGSD KQETKQPIAR  300
FFCGNPPRKE KCVKREREPR FAIKTKTHTD VMDDGYKWRK YGQKPVKSSP HPRNYYRCTT  360
PNCPVRKRVE RSTEDPDQVI TTYEGRHTHQ SPSFLKGSPE YPSELSGLLG ALYHHYSLAC  420
NQAVRAHIPN FGDFGLSDLL FTPQGFSSNQ NNLNVLRAHE MLKLQQEAAC ASILIKLLQF  480
GAHNCTGRHQ EGGPTNFPCP NLSSVNPSSN QSPLFDWLSP TLEQLGRLLL PNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-26322393778Probable WRKY transcription factor 4
2lex_A8e-26322393778Probable WRKY transcription factor 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024403674.10.0uncharacterized protein LOC112295882
TrEMBLA0A2K1IWZ00.0A0A2K1IWZ0_PHYPA; Uncharacterized protein
STRINGPP1S109_123V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.12e-32WRKY family protein