PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c19_2940V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family G2-like
Protein Properties Length: 394aa    MW: 43247.7 Da    PI: 8.6186
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c19_2940V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like109.32e-3457111155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kprlrWtpeLHerFv+av+qLGG++kAtPk+++++m+vkgLtl+h+kSHLQkYRl
  Pp3c19_2940V3.3.p  57 KPRLRWTPELHERFVDAVTQLGGADKATPKSVMRVMGVKGLTLYHLKSHLQKYRL 111
                        79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.0E-3454112IPR009057Homeodomain-like
PROSITE profilePS5129412.24354114IPR017930Myb domain
TIGRFAMsTIGR015575.8E-2457112IPR006447Myb domain, plants
SuperFamilySSF466894.3E-1757112IPR009057Homeodomain-like
PfamPF002495.5E-959110IPR001005SANT/Myb domain
PfamPF143797.2E-21150197IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MFQMKSKYMN PGISSPGPYQ NRAQPSVYAH DKLSPPYGIT QTMNGGDMVS LSPADPKPRL  60
RWTPELHERF VDAVTQLGGA DKATPKSVMR VMGVKGLTLY HLKSHLQKYR LGKQLNRDQH  120
LQNKDGSLQR SNSLSDGMQQ LKPQNLQDGM QMSEQLQLQL EVQQRLHDQL EVQRHLQMRI  180
QAQGKYLQSI LEKAKETLAS HTMESPSLEA AHAELSELAT KVTTLGMFPS GFSNINMPGM  240
AQPDPLMALH PQPRQPARNS DASPQKSFLN TNAEDNKGVS GSGDPQGASE EMSANCLHPD  300
GSYNAKSNQS RLAHAAVANS TTSDALAGIT MSSSTYCKSV ASFWRVSSYQ SMLESSSTMF  360
RVLTEPNDNN ANQFANAMVT EMLIQQHLLG STS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-2157113258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-2157113258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-2157113157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-2157113157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-2157113157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-2157113157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-2157113258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-2157113258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-2157113258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-2157113258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-2157113258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-2157113258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024403588.10.0protein PHR1-LIKE 2-like
TrEMBLA0A2K1IMQ60.0A0A2K1IMQ6_PHYPA; Uncharacterized protein
STRINGPP1S109_107V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.12e-54G2-like family protein