PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c19_2720V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Nin-like
Protein Properties Length: 1108aa    MW: 118114 Da    PI: 5.9407
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c19_2720V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK22.13e-07772798228
             RWP-RK   2 ekeisledlskyFslpikdAAkeLgvc 28 
                        ek+i l++l++yF++++kdAAk++gv 
  Pp3c19_2720V3.1.p 772 EKTIGLNVLQQYFAGSLKDAAKSIGVV 798
                        799**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542774.58E-1910201103No hitNo description
PROSITE profilePS5174522.22710231105IPR000270PB1 domain
SMARTSM006662.8E-1610231105IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2405.6E-1910241103No hitNo description
PfamPF005647.4E-1410241102IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1108 aa     Download sequence    Send to blast
MELPQASRAC VPRWRPTTEF GGHGQQQQVV SQAMGVLAGL GGSAGESKFV MDEAVLTDLM  60
ELEPLHEQLL GESWAEGNYG DYGGYLALPA SSHGGVFAGP VPALASLQAF SYANGSLAAS  120
VQAFQQELML QQALESSQQQ SIPGASSSQS SLAMSSAVVS GMSSYSAAVG GRSLSSPSLS  180
EAAHMLLGNQ GLAGVVARDG RGMGDSRGGV DGRNGKVEIG EGGVVDKEDD KSSVSTVEGN  240
PVSSGNLEAG VRRPRIAAEL PLPLRDRMME ALRLIGQSLE DVLVQVWMPV VQGSRKCLLT  300
REQPFVVEPN NEQLWLYRNM TEGYEFPAER AEGKVLELPG RVFTGQQAEW TPNVQYYSSQ  360
EYLRVKEAQR CDIRGSLAVP VLDPVSRQCV AVIELVGRAE KIQYGPDVDI IARALQAVNL  420
TCPVGLETPP LERSSWGRQA ALAEIAEVLK GVCEAHKLPL AQTWVPTYRY GGRGDAKAQS  480
HNAVQVNGGR GVRKVVLRIV DGDGPCYVGE ARMWGFRRAC LEHALEKGQG VPGKAMLTNL  540
PVFDSDVKSF SKDEYPLGHY AKLFGLVSAV AIRLRSVHTG DEDFILEFFL PMDCVESEKQ  600
QQMLNSLSIT MQRICQSLRT LSERELEEER RVAMAESIEM QAKAVKLEAK EVCNKEDFLA  660
WRGGFNRHGG GVNGEETSPA FSQVMQQQHG VQQAARFVPQ RSALQQFSHG VLLGRGRDDG  720
LRIPESHVYP GYHSEQLPVE QGLGMGGFGC PGLGQDVASH RRRFERRRGT TEKTIGLNVL  780
QQYFAGSLKD AAKSIGVVSS LEEKVLDGSN GDDGQGRAQV DNGDMCRSND GNSTSSGGSN  840
PNVKAGYGSN GGHYCPGMSP LASGSMLTGG DADRGDDGGK RSVGTAFQGV GNAGKGSGAG  900
KGQQASPLGR SGEQPVPGRG GAGRVSDLVR GATPRGWNES RVHGGGGALA ALKGGDQHGS  960
HGFSEDPVSS CNRANDGEEE VTGCGLESPG FGSSPASDCS SPSTGVNGTS NKKAWAGQED  1020
GAAITVKVTH GLDTVRVKFS RNGSFVELKE EVRRRLKLVG QKFSLKYLDD DEEWMLLACD  1080
ADLQESIDLM RVSGRHAIKL MVCNSML*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.169501e-116protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024356825.10.0protein NLP1-like
TrEMBLA0A2K1IWX50.0A0A2K1IWX5_PHYPA; Uncharacterized protein
STRINGPP1S109_79V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP2991697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.13e-87NIN like protein 7