PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c19_2670V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Nin-like | ||||||||
Protein Properties | Length: 1253aa MW: 133420 Da PI: 6.9532 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 89.5 | 2.7e-28 | 772 | 822 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Pp3c19_2670V3.1.p 772 EKTIGLNVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 822 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.665 | 754 | 842 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 7.6E-25 | 775 | 822 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 5.23E-19 | 1165 | 1248 | No hit | No description |
SMART | SM00666 | 2.8E-16 | 1168 | 1250 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 22.227 | 1168 | 1250 | IPR000270 | PB1 domain |
Pfam | PF00564 | 8.6E-14 | 1169 | 1247 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 6.5E-19 | 1169 | 1248 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1253 aa Download sequence Send to blast |
MELPQASRAC VPRWRPTTEF GGHGQQQQVV SQAMGVLAGL GGSAGESKFV MDEAVLTDLM 60 ELEPLHEQLL GESWAEGNYG DYGGYLALPA SSHGGVFAGP VPALASLQAF SYANGSLAAS 120 VQAFQQELML QQALESSQQQ SIPGASSSQS SLAMSSAVVS GMSSYSAAVG GRSLSSPSLS 180 EAAHMLLGNQ GLAGVVARDG RGMGDSRGGV DGRNGKVEIG EGGVVDKEDD KSSVSTVEGN 240 PVSSGNLEAG VRRPRIAAEL PLPLRDRMME ALRLIGQSLE DVLVQVWMPV VQGSRKCLLT 300 REQPFVVEPN NEQLWLYRNM TEGYEFPAER AEGKVLELPG RVFTGQQAEW TPNVQYYSSQ 360 EYLRVKEAQR CDIRGSLAVP VLDPVSRQCV AVIELVGRAE KIQYGPDVDI IARALQAVNL 420 TCPVGLETPP LERSSWGRQA ALAEIAEVLK GVCEAHKLPL AQTWVPTYRY GGRGDAKAQS 480 HNAVQVNGGR GVRKVVLRIV DGDGPCYVGE ARMWGFRRAC LEHALEKGQG VPGKAMLTNL 540 PVFDSDVKSF SKDEYPLGHY AKLFGLVSAV AIRLRSVHTG DEDFILEFFL PMDCVESEKQ 600 QQMLNSLSIT MQRICQSLRT LSERELEEER RVAMAESIEM QAKAVKLEAK EVCNKEDFLA 660 WRGGFNRHGG GVNGEETSPA FSQVMQQQHG VQQAARFVPQ RSALQQFSHG VLLGRGRDDG 720 LRIPESHVYP GYHSEQLPVE QGLGMGGFGC PGLGQDVASH RRRFERRRGT TEKTIGLNVL 780 QQYFAGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIN KVSRSLKKLQ GVIDSVQGAE 840 GALRISALTG DLSSAAVAAA AVSGHMNKGL AASSPGNLSV SWSTLSPSCV EGKEAHAKVG 900 SAESLLGPKE ENRRRHDPCS SQKVLLSMLK PTLQFRPEDD RVVSSLEGKV LGGSNGDDGQ 960 GRAQVDNGDM CRSNDGNSTS SGGSNPNVKA GYGSNGGHYC PGMSPLASGS MLTGGDADRG 1020 DDGGKRSVGT AFQGVGNAGK GSGAGKGQQA SPLGRSGEQP VPGRGGAGRV SDLVRGATPR 1080 GWNESRVHGG GGALAALKGG DQHGSHGFSE DPVSSCNRAN DGEEEVTGCG LESPGFGSSP 1140 ASDCSSPSTG VNGTSNKKAW AGQEDGAAIT VKVTHGLDTV RVKFSRNGSF VELKEEVRRR 1200 LKLVGQKFSL KYLDDDEEWM LLACDADLQE SIDLMRVSGR HAIKLMVCNS ML* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.16950 | 1e-116 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024404168.1 | 0.0 | protein NLP1-like | ||||
TrEMBL | A0A2K1IWX0 | 0.0 | A0A2K1IWX0_PHYPA; Uncharacterized protein | ||||
STRING | PP1S109_79V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP299 | 16 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24020.1 | 9e-87 | NIN like protein 7 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c19_2670V3.1.p |