PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c19_2450V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family CO-like
Protein Properties Length: 465aa    MW: 50747.8 Da    PI: 6.6085
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c19_2450V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.27.9e-092163339
           zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                       +r+C+ + +k++q+fC  ++ +lC  C ++ H+       H++
  Pp3c19_2450V3.1.p 21 ARTCDVCANKNAQWFCSADDAYLCTACDTQVHSAnalsrrHER 63
                       689*****************************65777777776 PP
2CCT69.31e-23417460144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        R+a++lRYkeKr tR+F+KkirYe+RK++Ae+RpR+KGrFvk++
  Pp3c19_2450V3.1.p 417 RDAKVLRYKEKRATRLFSKKIRYEVRKVNAERRPRMKGRFVKRT 460
                        99****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.4E-61966IPR000315B-box-type zinc finger
PROSITE profilePS501199.9261966IPR000315B-box-type zinc finger
PfamPF006431.3E-72164IPR000315B-box-type zinc finger
CDDcd000212.23E-62263No hitNo description
PROSITE profilePS5101715.596417459IPR010402CCT domain
PfamPF062036.8E-18417459IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MATSVVNSSA ATAVAFSVCT ARTCDVCANK NAQWFCSADD AYLCTACDTQ VHSANALSRR  60
HERIHLPAHG MRTQSHATGF QVPAEGQCGA YIMKRLHPHP EQVLPSRKRS RVSKPYSHHL  120
RKLTRMVSKD LIKSEDLVAI NAEAKLFDFL NTDEVLHGGN QEVPSLSIVM GADAACSPDI  180
DLLSSDYKFQ GNDHSASADS FAAFFKGKAA PSQTLFDDSD QFLVPDAFNF RFDVEISDPS  240
TTPADAIIGL SSEAFFHSGD IPGLDGFESF VPDLSVPGNF GLNLDQELHN GVQAPSQPTE  300
PASLGCKRNL AAPDHTTAGP FAKFFAQKPK SESQELISHD EIKREAKEML KCCREGDGDA  360
QMVPTLKLNL EDVLAAWSDK GEPWISSDES TSSGSDVGLV PDMHFSTADD NQSGGGRDAK  420
VLRYKEKRAT RLFSKKIRYE VRKVNAERRP RMKGRFVKRT SSNS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024403509.10.0zinc finger protein CONSTANS-LIKE 7-like
TrEMBLA0A2K1IWW90.0A0A2K1IWW9_PHYPA; Uncharacterized protein
STRINGPP1S109_40V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8021649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-21B-box type zinc finger protein with CCT domain