PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c19_20750V3.10.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | MYB | ||||||||
Protein Properties | Length: 355aa MW: 38572.3 Da PI: 6.0491 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.2 | 5.1e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W ++Ed++lv +++ +G +W++I++ g+ R++k+c++rw +yl Pp3c19_20750V3.10.p 14 RGPWAADEDKKLVSYINAHGVSCWRAIPKLAGLLRCGKSCRLRWTNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.8 | 3.8e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +T E+ l++d+++ lG++ W++Ia ++ gRt++++k++w+++l Pp3c19_20750V3.10.p 67 RGGFTDAEENLILDLHATLGNR-WSKIAMQLP-GRTDNEIKNYWNTHL 112 7889******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.221 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.49E-27 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.56E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.989 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.16E-12 | 70 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MGRKPCCEKV GLKRGPWAAD EDKKLVSYIN AHGVSCWRAI PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGGF TDAEENLILD LHATLGNRWS KIAMQLPGRT DNEIKNYWNT HLKKKLCSMG 120 LDPVTHKPVD SACTDGDTET ADEGNLDSSE GHSGHSKVME NSLASKVSDE LAQLKTIDYL 180 GERMDTQKPF PTTCNEIPEQ GAISGKSCSL DTTNSFKEHK PDVFVKLEEG TYTTGPDHMN 240 AIALENHTPL GPNSEGAADS CWLPQEQSLD TAVGGSSFYQ EVAVMNGGGL FRQLSGFTQS 300 NMATAGWSTY FGETPGQPSS TGCSISSWNQ SFVQPPGVPP SKEIQKLAAI LDQI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-28 | 12 | 116 | 5 | 108 | B-MYB |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.2391 | 0.0 | protonema |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00510 | DAP | Transfer from AT5G14340 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024403891.1 | 0.0 | protein ODORANT1-like | ||||
Refseq | XP_024403892.1 | 0.0 | protein ODORANT1-like | ||||
Refseq | XP_024403893.1 | 0.0 | protein ODORANT1-like | ||||
Refseq | XP_024403894.1 | 0.0 | protein ODORANT1-like | ||||
Refseq | XP_024403895.1 | 0.0 | protein ODORANT1-like | ||||
Refseq | XP_024403896.1 | 0.0 | protein ODORANT1-like | ||||
Refseq | XP_024403898.1 | 0.0 | protein ODORANT1-like | ||||
Refseq | XP_024403899.1 | 0.0 | protein ODORANT1-like | ||||
Refseq | XP_024403900.1 | 0.0 | protein ODORANT1-like | ||||
Refseq | XP_024403901.1 | 0.0 | protein ODORANT1-like | ||||
TrEMBL | A0A2K1IZ71 | 0.0 | A0A2K1IZ71_PHYPA; Uncharacterized protein | ||||
STRING | PP1S433_19V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14340.1 | 5e-72 | myb domain protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c19_20750V3.10.p |