PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c19_20650V3.2.p
Common NamePHYPADRAFT_173281
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 310aa    MW: 35229.5 Da    PI: 4.5422
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c19_20650V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.43e-072971952
                 AP2  9 dkkrgr...WvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkk 52
                         + +gr   +++eIr        + ++++g+f+t ++A +a++aa  +
  Pp3c19_20650V3.2.p 29 EP-KGRvkgFRVEIRPsN----SKSKIWVGTFDTRDKAMRAYDAALYY 71
                        55.466677999999822....259*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.12382IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-72579IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.4E-103473IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MTNRPFNSSS GAVNSDTRKQ SKRFKGILEP KGRVKGFRVE IRPSNSKSKI WVGTFDTRDK  60
AMRAYDAALY YIGKDPHYYS YPKGYFRKCS QKPSKEVVVS EAKRFAEKTD FLLKNMSDLE  120
IVDEILNELP ARAVLFDAPS QDLQVAEPLL WPELPNQLPL KASSDDLQAD DSFWSELHNE  180
WPHFDVFPHD PRMDEILWPE LPIESPLEGP SQDSQVDETL WSELPNEPPL EASSHDFQVC  240
EGLLLGFNNA LRKPSNESPE LPNELPLVAS SHDIQVEEAL LADLIEKTSS EALSYARPKC  300
QEPYDWPCY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.58810.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024356457.10.0ethylene-responsive transcription factor ERF015-like
RefseqXP_024356458.10.0ethylene-responsive transcription factor ERF015-like
TrEMBLA9U2A60.0A9U2A6_PHYPA; Predicted protein
STRINGPP1S433_29V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50260.14e-08cooperatively regulated by ethylene and jasmonate 1
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]