PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c19_20410V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ZF-HD
Protein Properties Length: 351aa    MW: 37446.3 Da    PI: 8.819
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c19_20410V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.61.1e-31141197360
         ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                         +vrY+eC+kNhAa +Ggha+DGCgEfmp  g eg+++al+CaAC+CHRnFHRreve e
  Pp3c19_20410V3.2.p 141 AVRYRECQKNHAAGMGGHAMDGCGEFMPG-GGEGSVDALRCAACNCHRNFHRREVEGE 197
                         69**************************9.8899********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-15142209IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.8E-28142194IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.5E-29143194IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.682144193IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.04E-18274348IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-31277349IPR009057Homeodomain-like
TIGRFAMsTIGR015652.8E-26287343IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MDLGSGHESS NDQPQPEQPQ MQTSPLPSLP APIPMMLPSL GASNYHATPT SLHQQQQHHH  60
HHHPHALHHD LPSATKLKLL NQNNTPSGNG GSVPTKYNDV KNSDQVATDQ AREILRQAVV  120
TAVTESNAAS TKAANAAKKG AVRYRECQKN HAAGMGGHAM DGCGEFMPGG GEGSVDALRC  180
AACNCHRNFH RREVEGEVLC DCKRKPKMGA PLGTGIVNTG QPPTLTSTTP VTTLALTASV  240
AGQMTPLAMA ALSAGGPTDS DEQDDGPGNV TSGGGMMMSM RSPSAIKKRF RTKFTTEQKD  300
KMCAFAEKLG WRIQKHDEAA VQEFCTTVGV KRHVLKVWMH NNKHTVGKKP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-262883451875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024356602.10.0zinc-finger homeodomain protein 1-like
SwissprotA2Z2591e-63ZHD1_ORYSI; Zinc-finger homeodomain protein 1
SwissprotQ6YXH52e-63ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A2K1IZ450.0A0A2K1IZ45_PHYPA; Uncharacterized protein
STRINGPP1S491_6V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.13e-37homeobox protein 21
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]