PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c19_20410V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ZF-HD | ||||||||
Protein Properties | Length: 351aa MW: 37446.3 Da PI: 8.819 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 100.6 | 1.1e-31 | 141 | 197 | 3 | 60 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +vrY+eC+kNhAa +Ggha+DGCgEfmp g eg+++al+CaAC+CHRnFHRreve e Pp3c19_20410V3.1.p 141 AVRYRECQKNHAAGMGGHAMDGCGEFMPG-GGEGSVDALRCAACNCHRNFHRREVEGE 197 69**************************9.8899********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-15 | 142 | 209 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.8E-28 | 142 | 194 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.5E-29 | 143 | 194 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.682 | 144 | 193 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.04E-18 | 274 | 348 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.6E-31 | 277 | 349 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.8E-26 | 287 | 343 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MDLGSGHESS NDQPQPEQPQ MQTSPLPSLP APIPMMLPSL GASNYHATPT SLHQQQQHHH 60 HHHPHALHHD LPSATKLKLL NQNNTPSGNG GSVPTKYNDV KNSDQVATDQ AREILRQAVV 120 TAVTESNAAS TKAANAAKKG AVRYRECQKN HAAGMGGHAM DGCGEFMPGG GEGSVDALRC 180 AACNCHRNFH RREVEGEVLC DCKRKPKMGA PLGTGIVNTG QPPTLTSTTP VTTLALTASV 240 AGQMTPLAMA ALSAGGPTDS DEQDDGPGNV TSGGGMMMSM RSPSAIKKRF RTKFTTEQKD 300 KMCAFAEKLG WRIQKHDEAA VQEFCTTVGV KRHVLKVWMH NNKHTVGKKP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-26 | 288 | 345 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024356602.1 | 0.0 | zinc-finger homeodomain protein 1-like | ||||
Swissprot | A2Z259 | 1e-63 | ZHD1_ORYSI; Zinc-finger homeodomain protein 1 | ||||
Swissprot | Q6YXH5 | 2e-63 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A2K1IZ45 | 0.0 | A0A2K1IZ45_PHYPA; Uncharacterized protein | ||||
STRING | PP1S491_6V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 3e-37 | homeobox protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c19_20410V3.1.p |
Publications ? help Back to Top | |||
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