PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c19_19050V3.7.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Dof
Protein Properties Length: 400aa    MW: 43761.6 Da    PI: 8.8708
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c19_19050V3.7.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.43.6e-3961121262
              zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                         +++ ++cprC+s ntkfCyynnysl+qPr+fCk+CrryWt+GG+lrnvPvGgg+rknk+++
  Pp3c19_19050V3.7.p  61 PDQVIACPRCQSLNTKFCYYNNYSLTQPRHFCKSCRRYWTAGGTLRNVPVGGGCRKNKRTK 121
                         68899*****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-2654119IPR003851Zinc finger, Dof-type
PfamPF027011.6E-3362119IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.21765119IPR003851Zinc finger, Dof-type
PROSITE patternPS01361067103IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MVNVQTPLMS VAVLGHGDWA MIPSSSNHEQ QQQQAQLQQQ EKKASQLFAQ RALQERRLKP  60
PDQVIACPRC QSLNTKFCYY NNYSLTQPRH FCKSCRRYWT AGGTLRNVPV GGGCRKNKRT  120
KPRTPEGQNG RTGSADGDSM SVPVLQHPGF NSTSIDFLSS SEGSAFGSAD PSMRADSPMC  180
QSTEGGLPMF HPGAQSSSIA QHQLPQPFDS GIPGLNFFRN ANRVPGTTLN LHPTFQMPTG  240
DLSEMFDTSN APRVGALSTL SEGLGTFNIN PKSGRDQQSL MSLERWQAAS KQHAPSGIWG  300
LPEMAQAQAN ADMSRHQDAK GKMTLAMAPA SGMDAPKRSQ QQQQQQQHQQ RPTPSWEHSN  360
PQENPGLHYE QQSEQNYWRN PGGWPSTEAF QSSGGGQAL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.74090.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024356397.10.0dof zinc finger protein DOF1.4-like isoform X2
TrEMBLA0A2K1IYZ10.0A0A2K1IYZ1_PHYPA; Uncharacterized protein
STRINGPP1S170_42V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.12e-34TARGET OF MONOPTEROS 6