PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c19_18560V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GRAS
Protein Properties Length: 853aa    MW: 94025 Da    PI: 6.0432
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c19_18560V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS379.63.9e-1164938502374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                           lLl+cAeavss+d+ +a+++L +lsela+p+g+++qR++ayf+e++a+rl+  + +++  l++++    + ++ l+a+++f+e++P++k
  Pp3c19_18560V3.2.p 493 LALLLQCAEAVSSDDFDQANSILPQLSELATPYGTSVQRVVAYFAEGMASRLVTYCLGICPPLSSKQLV--SNQSFLSAMQVFNEICPFVK 581
                         579*********************************************************999888887..4778999************* PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                         fsh+taNqaI +a+eg   vH+iD+di++GlQWp+L+q LasRp+gpp++ iTg+g     s e+le+tg+rL++fA++++++fef++ va
  Pp3c19_18560V3.2.p 582 FSHFTANQAIFDAFEGMFNVHVIDIDIMHGLQWPPLFQLLASRPGGPPHVHITGLGT----SIETLEATGKRLTDFAASFNISFEFTA-VA 667
                         *********************************************************....9**************************.8* PP

                GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                         +++ +++l++L+v+  +a+aV++++  h+l+d ++s  +    +L+l+ +l+Pkv+++veq++ h +++Fl rf+eal+yysalfdsl a+
  Pp3c19_18560V3.2.p 668 DKIGNVDLSTLKVEFSDAVAVHWMH--HSLYDVTGSDLN----TLNLIEKLNPKVITLVEQDLRH-GGTFLSRFVEALHYYSALFDSLGAS 751
                         *************************..999999999999....**********************.789********************** PP

                GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkd 364
                         + ++s er++vE++ll+ ei+n++a  g +r+ + + + +Wr+ l++  Fkpv+ls kaa qa lll+     +gy++ e++g+l lgWkd
  Pp3c19_18560V3.2.p 752 YKADSPERHMVEQQLLSCEIKNILAFGGPARTGEAK-FDQWRDELGKR-FKPVSLSGKAAHQAALLLQGLFpCEGYTLLEHRGTLKLGWKD 840
                         ******************************888766.********986.*******************9877******************* PP

                GRAS 365 rpLvsvSaWr 374
                           L+++SaW+
  Pp3c19_18560V3.2.p 841 LYLFTASAWT 850
                         *********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.957466829IPR005202Transcription factor GRAS
PfamPF035141.4E-113493850IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 853 aa     Download sequence    Send to blast
MALVCPNPRE RLGLVTKEPT GVGSRTHYNV GFPGYRDQLR MTDNLRDPFH SGPETGGRDP  60
QDAERRGELQ EHRVHLPDLD FGVGAKWNCT GQISSWSSYD STSQSFPSTS AAGWVVSPLG  120
SNNSPFPSDG SFSDHLSSGL SNTSFPGALP ASLQVQSGGS AGGFFSGSTQ TASCNGNQLY  180
QNPPSLMNAA PRDSWGKIED APSPHHQLSC QYDMEQHGNY GYGVQPAREA VKDHFSGMDE  240
DSVAAWVDGM IMEMMEAMPG VPIEQILTNL SEVLAPSNSQ LERIIGSRVQ SLYGGAGLRV  300
QTFLHTGPSR FGKRTREGQI GWRNAKSSQN EARAYQDTPS HHHVRPDNFM EQNAVASLAR  360
DELHYPRPQK RTIDNLQLSL EPADERSLRH LHTAQQPMPE DQYSHQVLRS RDQTTKPVQH  420
QHYFQPHLQH QQQKSGEIQN DFSPPSNAAQ YPILNTRGFN DAVSLPQNVP QSTPRNAQPE  480
PPNATDEEGL QLLALLLQCA EAVSSDDFDQ ANSILPQLSE LATPYGTSVQ RVVAYFAEGM  540
ASRLVTYCLG ICPPLSSKQL VSNQSFLSAM QVFNEICPFV KFSHFTANQA IFDAFEGMFN  600
VHVIDIDIMH GLQWPPLFQL LASRPGGPPH VHITGLGTSI ETLEATGKRL TDFAASFNIS  660
FEFTAVADKI GNVDLSTLKV EFSDAVAVHW MHHSLYDVTG SDLNTLNLIE KLNPKVITLV  720
EQDLRHGGTF LSRFVEALHY YSALFDSLGA SYKADSPERH MVEQQLLSCE IKNILAFGGP  780
ARTGEAKFDQ WRDELGKRFK PVSLSGKAAH QAALLLQGLF PCEGYTLLEH RGTLKLGWKD  840
LYLFTASAWT NE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-15948685013379Protein SCARECROW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024403515.10.0protein SCARECROW-like
TrEMBLA0A2K1IYZ00.0A0A2K1IYZ0_PHYPA; Uncharacterized protein
STRINGPP1S882_1V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP21831437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-150GRAS family protein