PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c19_18240V3.6.p
Common NamePHYPADRAFT_88654
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family E2F/DP
Protein Properties Length: 558aa    MW: 60629.3 Da    PI: 8.203
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c19_18240V3.6.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP56.64.3e-181471971
             E2F_TDP  9 ltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                        ++ +fl+l+ ++e + ++l+e++++L    v  +rRRiYDi+NVLe+++++ +k+kn+++w+g
  Pp3c19_18240V3.6.p 14 IAVRFLNLCGTEEGECISLDEASSRL---GV--ERRRIYDIVNVLESVEILIRKAKNRYTWHG 71
                        6789******9999************...**..****************************98 PP
2E2F_TDP71.21.1e-22149229171
             E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                         r+eksL+ll+qkf++l+  s++++v+l+++a+ L+       ++k+k+RR+YDi+N+L++l+liek     ++k+++rw g
  Pp3c19_18240V3.6.p 149 RREKSLGLLSQKFVQLFLVSQTQVVSLDDAARLLLGGckdasKFKTKVRRLYDIANILSSLKLIEKthiaeNRKPAFRWLG 229
                         689*******************************988999*****************************999*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013722.8E-19671IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.6E-151371IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.46E-121470IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.1E-191472IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.9E-24145230IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.4E-33149229IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467857.8E-12151230IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.0E-19151229IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MMATMDGSNC GSVIAVRFLN LCGTEEGECI SLDEASSRLG VERRRIYDIV NVLESVEILI  60
RKAKNRYTWH GCSRLTQALQ TLKDLALRDY GLGEFANTST DERSSTATNN CDSDDEDEER  120
KNLPSQESEG CASVLSQQSA APTAKADYRR EKSLGLLSQK FVQLFLVSQT QVVSLDDAAR  180
LLLGGCKDAS KFKTKVRRLY DIANILSSLK LIEKTHIAEN RKPAFRWLGT KDDLVGPATR  240
MRITGNEFQS QNASQSLNCS SLSIQKTQRG LKRACMDAPR AEATPSKRTA LKPLQPRDSN  300
TMTPHSRDVI NKPVPLYPRA SQVDSPVSDP RTLNFTASPH DAAESPTARG TPRKSTGGWR  360
EWGDSIQTQA IPITPPWSAQ CCDHAGSSNA VALPGTSSPI CTPGITSQTP GTPTMTPMSG  420
RSCCTCQSRG SLDNLFPFRP PGALFNPFFP PPPFPMLPQL AAAAAAAGFP FPPTGFVPEQ  480
FLGSDPTRSQ DCSQHRVDNG ITAAAALQYQ NEALGHMFAH YTEAWKSWYL QAASMVNPSC  540
FETPPPAPRP RSPQSPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A3e-393022132228Transcription factor E2F8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024403367.10.0uncharacterized protein LOC112295720 isoform X2
TrEMBLA9T6B50.0A9T6B5_PHYPA; Predicted protein
STRINGPP1S172_68V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.15e-56DP-E2F-like 1
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]