PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c19_16060V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | GRAS | ||||||||
Protein Properties | Length: 728aa MW: 81804.5 Da PI: 5.9523 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 361.9 | 9.4e-111 | 350 | 718 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 ++lLl+cA +vs++d + a+ l+ +l+ ++s +g+++qR+a y++eAL a++++++++ly a+++++ s +++ l+a++lf++ sP++k Pp3c19_16060V3.1.p 350 KTLLLKCAFVVSKDDVRTANDLIRELRMHSSVHGTALQRMAYYYMEALVAKMSGTGPQLYMAITSNTPS---TATMLKAHRLFVDYSPYIK 437 789*********************************************************999999988...8999*************** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181 ++h+ ++Il+a+eg++rvH +D+++ +G+QWp+L+q L++R++gpp+lRiT ++ p++g + +++e+g rLa+fA+ +vpfefn+ Pp3c19_16060V3.1.p 438 VTHFFSTKTILDAFEGADRVHLVDYGVAYGAQWPCLIQRLSQRKGGPPHLRITCIDLPQPGgkVSARVKEVGCRLAEFAQLWEVPFEFNA- 527 ************************************************************999999************************. PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272 +a+++e+++ +L+++++E+laVn++++l +lldes +s+r+ +L+ ++ ++Pkv+++ +a++n++ F++rf e+++yy ++fd++e Pp3c19_16060V3.1.p 528 LADKWESITSAHLNLNQDEVLAVNCQYRLRNLLDESIMAASPRKLLLEKIRFMNPKVFIMLTVNANYNAPFFMTRFRESMKYYFTMFDAME 618 6****************************************************************************************** PP GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363 +++p+++ +r+ +Ere+ grei n+vaceg er+er e +++W+ ++aGF++ pls +a+++k+++ +++d y v e+ ++++gWk Pp3c19_16060V3.1.p 619 VSMPANDPDRVILEREFYGREILNIVACEGVERVERAEPYRQWQTLTQRAGFTQKPLSPIIASKIKAMMGSYHKD-YGVGEDGSWFLMGWK 708 *************************************************************************77.*************** PP GRAS 364 drpLvsvSaW 373 ++ + ++++W Pp3c19_16060V3.1.p 709 NQIVRAMTVW 718 ********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 62.331 | 323 | 700 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.3E-108 | 350 | 718 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 728 aa Download sequence Send to blast |
MLGTRQSRSG ALARETSPLA SQLQQAWLQS QIQSQAPKHQ KRGFTTLGED DVSVQNRVVQ 60 QFHQVASDLS SIVADHANHT GFPNVVEKEE LYFHKTRLEM PEFPRRPETP QLVSYSRKAD 120 KPQKPRSGNF LERRSSSYSS LSSASSGSLS PTSTVSFESV QLHQEFDAPL DVADYAISGT 180 LDLACQSEPL VRFLDGMLAE DNMDGKKFTL QEGFDYHAIA KEFDDIARPN LASEYGSSDF 240 ADGDYDMSWA SMGILPTEEA VADKLIHAYT SNLNKHVTDV SENVDSSTWV NEGDACTDHS 300 DQSWDWYLER LRPNPTGRSL SSSIFQGDSL GQDMSPDALS AFPAVCVDLK TLLLKCAFVV 360 SKDDVRTAND LIRELRMHSS VHGTALQRMA YYYMEALVAK MSGTGPQLYM AITSNTPSTA 420 TMLKAHRLFV DYSPYIKVTH FFSTKTILDA FEGADRVHLV DYGVAYGAQW PCLIQRLSQR 480 KGGPPHLRIT CIDLPQPGGK VSARVKEVGC RLAEFAQLWE VPFEFNALAD KWESITSAHL 540 NLNQDEVLAV NCQYRLRNLL DESIMAASPR KLLLEKIRFM NPKVFIMLTV NANYNAPFFM 600 TRFRESMKYY FTMFDAMEVS MPANDPDRVI LEREFYGREI LNIVACEGVE RVERAEPYRQ 660 WQTLTQRAGF TQKPLSPIIA SKIKAMMGSY HKDYGVGEDG SWFLMGWKNQ IVRAMTVWEP 720 TSATTVT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-50 | 355 | 722 | 25 | 382 | Protein SCARECROW |
5b3h_A | 1e-50 | 355 | 722 | 24 | 381 | Protein SCARECROW |
5b3h_D | 1e-50 | 355 | 722 | 24 | 381 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.4346 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024403964.1 | 0.0 | scarecrow-like protein 33 | ||||
TrEMBL | A0A2K1IYM3 | 0.0 | A0A2K1IYM3_PHYPA; Uncharacterized protein | ||||
STRING | PP1S20_86V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP266 | 15 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-118 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c19_16060V3.1.p |